Wall clock time and date at job start Sun Mar 29 2020 22:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38320 * 119.96121 * 2 1 4 4 C 1.38279 * 120.16345 * 180.02562 * 3 2 1 5 5 C 1.38099 * 120.07899 * 359.97438 * 4 3 2 6 6 C 1.50709 * 120.04122 * 179.97438 * 5 4 3 7 7 C 1.38953 * 119.92265 * 359.97438 * 5 4 3 8 8 S 1.76196 * 120.08516 * 180.02562 * 7 5 4 9 9 C 1.81395 * 103.00334 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47348 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47405 * 304.99974 * 10 9 8 12 12 O 1.42899 * 109.46993 * 65.00100 * 10 9 8 13 13 C 1.50702 * 109.47159 * 184.99940 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 C 1.38065 * 119.95760 * 180.23639 * 2 1 3 22 22 H 1.09004 * 109.47211 * 90.00010 * 1 2 3 23 23 H 1.09001 * 109.47167 * 209.99818 * 1 2 3 24 24 H 1.08993 * 109.46921 * 329.99739 * 1 2 3 25 25 H 1.08005 * 119.92133 * 359.97438 * 3 2 1 26 26 H 1.07995 * 119.96132 * 179.97438 * 4 3 2 27 27 H 1.08996 * 109.46929 * 270.01578 * 6 5 4 28 28 H 1.09000 * 109.46817 * 30.01994 * 6 5 4 29 29 H 1.09001 * 109.46773 * 150.02099 * 6 5 4 30 30 H 1.09009 * 109.47214 * 59.99845 * 9 8 7 31 31 H 1.09003 * 109.47422 * 300.00216 * 9 8 7 32 32 H 0.96699 * 113.99712 * 60.00257 * 12 10 9 33 33 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.04394 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1984 0.0000 4 6 3.5806 1.2032 -0.0005 5 6 4.2770 0.0107 -0.0005 6 6 5.7840 0.0170 -0.0017 7 6 3.5865 -1.1952 0.0005 8 16 4.4706 -2.7192 0.0012 9 6 3.1466 -3.9592 0.0034 10 6 3.7603 -5.3606 0.0035 11 1 4.4451 -5.4576 -0.8389 12 8 4.4742 -5.5679 1.2239 13 6 2.6651 -6.3886 -0.1186 14 1 1.6345 -6.0739 -0.1896 15 6 2.9794 -7.7309 -0.1459 16 7 2.0241 -8.6278 -0.2579 17 14 4.7622 -8.2753 -0.0236 18 1 5.1223 -8.4742 1.4032 19 1 4.9417 -9.5513 -0.7620 20 1 5.6396 -7.2335 -0.6151 21 6 2.1965 -1.1962 -0.0049 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6559 2.1326 -0.0004 26 1 4.1166 2.1408 -0.0010 27 1 6.1465 0.0183 -1.0296 28 1 6.1440 0.9085 0.5118 29 1 6.1514 -0.8715 0.5119 30 1 2.5294 -3.8333 -0.8863 31 1 2.5308 -3.8317 0.8937 32 1 3.9260 -5.4964 2.0172 33 1 2.2452 -9.5720 -0.2767 34 1 1.6565 -2.1315 -0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221575634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:11 Heat of formation + Delta-G solvation = -63.702320 kcal Electronic energy + Delta-G solvation = -15842.224127 eV Core-core repulsion = 13250.641414 eV Total energy + Delta-G solvation = -2591.582713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26556 -38.27479 -34.80138 -34.52814 -32.43463 -31.56198 -30.14469 -27.68206 -25.76129 -23.88387 -23.18258 -21.59462 -19.66120 -17.81021 -17.03672 -16.75985 -16.68623 -16.34772 -16.18440 -15.30984 -15.06494 -14.94173 -14.55047 -14.14360 -13.80217 -13.63827 -13.58484 -13.38490 -13.01786 -12.83336 -12.74209 -12.58474 -12.29571 -11.96711 -11.85850 -11.43406 -10.95432 -10.92916 -10.60236 -10.54311 -9.51987 -8.42987 -8.33693 -6.59821 0.28034 0.38193 0.60222 1.39065 1.41250 1.54331 1.56176 2.33345 2.69973 2.91075 3.81757 3.84652 3.90666 3.99208 4.08145 4.13029 4.31046 4.40686 4.57802 4.70782 4.75741 4.77393 4.79898 4.85117 4.98867 5.12979 5.22898 5.30361 5.32350 5.36231 5.56404 5.63355 5.98946 6.04429 6.51593 7.04030 7.21318 8.70640 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.005555 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.564261 B = 5039.146189 C = 5815.781143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.101 4.101 5 C -0.091 4.091 6 C -0.113 4.113 7 C -0.101 4.101 8 S -0.121 6.121 9 C -0.105 4.105 10 C 0.218 3.782 11 H 0.059 0.941 12 O -0.581 6.581 13 C -0.563 4.563 14 H 0.046 0.954 15 C 0.038 3.962 16 N -0.930 5.930 17 Si 0.971 3.029 18 H -0.271 1.271 19 H -0.299 1.299 20 H -0.265 1.265 21 C -0.153 4.153 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.376 0.624 33 H 0.271 0.729 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 20.888 1.195 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.170 4.170 7 C -0.214 4.214 8 S 0.125 5.875 9 C -0.253 4.253 10 C 0.159 3.841 11 H 0.077 0.923 12 O -0.389 6.389 13 C -0.602 4.602 14 H 0.065 0.935 15 C -0.164 4.164 16 N -0.569 5.569 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.226 1.226 20 H -0.189 1.189 21 C -0.177 4.177 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.171 0.829 26 H 0.174 0.826 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.225 0.775 33 H 0.080 0.920 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.015 20.303 0.775 20.711 hybrid contribution -1.593 -0.721 0.275 1.770 sum 2.422 19.583 1.050 19.760 Atomic orbital electron populations 1.20841 0.89489 1.03551 1.03087 1.20134 0.97327 0.92508 0.98474 1.21380 0.94359 0.97968 1.01027 1.21310 0.94419 0.97427 0.98835 1.19859 0.97079 0.91240 1.01538 1.20803 0.89790 1.03332 1.03056 1.21966 0.96536 0.97073 1.05788 1.85475 1.14516 0.95735 1.91780 1.24276 0.99098 0.96974 1.04972 1.19375 0.91060 0.88608 0.85087 0.92329 1.86350 1.41703 1.93922 1.16884 1.21651 0.93924 0.91518 1.53126 0.93535 1.25735 1.01761 0.96633 0.92231 1.70035 1.34953 1.02127 1.49754 0.85342 0.79939 0.76274 0.78680 1.19696 1.22625 1.18948 1.21221 0.92698 0.99087 1.04731 0.90382 0.92150 0.89314 0.82940 0.82623 0.90437 0.88931 0.92366 0.89984 0.89820 0.77515 0.91966 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 10.01 71.24 0.71 -1.40 16 2 C -0.08 -2.01 5.88 -19.89 -0.12 -2.12 16 3 C -0.13 -2.56 9.70 22.30 0.22 -2.34 16 4 C -0.10 -2.07 9.70 22.25 0.22 -1.86 16 5 C -0.09 -2.37 5.90 -19.72 -0.12 -2.49 16 6 C -0.11 -2.48 9.58 71.24 0.68 -1.79 16 7 C -0.10 -3.17 6.11 22.62 0.14 -3.03 16 8 S -0.12 -4.31 19.91 -56.49 -1.12 -5.43 16 9 C -0.10 -4.15 3.94 71.98 0.28 -3.86 16 10 C 0.22 10.15 2.30 29.85 0.07 10.22 16 11 H 0.06 2.88 7.19 -2.39 -0.02 2.87 16 12 O -0.58 -25.79 10.80 -148.98 -1.61 -27.40 16 13 C -0.56 -31.14 9.34 25.60 0.24 -30.90 16 14 H 0.05 2.79 7.99 -2.91 -0.02 2.76 16 15 C 0.04 2.16 5.47 84.66 0.46 2.63 16 16 N -0.93 -56.51 13.96 21.45 0.30 -56.21 16 17 Si 0.97 47.29 26.18 68.60 1.80 49.09 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 20 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 21 C -0.15 -4.65 9.02 22.41 0.20 -4.45 16 22 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 24 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 25 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 26 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 29 H 0.06 1.47 6.78 -2.39 -0.02 1.46 16 30 H 0.08 3.28 7.73 -2.39 -0.02 3.26 16 31 H 0.08 3.20 7.76 -2.39 -0.02 3.18 16 32 H 0.38 14.60 9.04 -74.06 -0.67 13.93 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.11 3.59 5.88 -2.91 -0.02 3.58 16 Total: -1.00 -65.37 295.87 2.72 -62.65 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.37 Total: 18.70 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 2.99 Total: -41.40 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.30 Total: -56.21 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.61 Total: -27.40 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.80 Total: 49.09 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.12 Total: -5.43 kcal Total: -65.37 2.72 -62.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221575634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.052 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds