Wall clock time and date at job start Sun Mar 29 2020 23:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00195 * 2 1 4 4 H 1.48498 * 109.46821 * 239.99689 * 3 2 1 5 5 H 1.48493 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46843 * 119.99741 * 3 2 1 7 7 C 1.37879 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.54169 * 60.09500 * 9 7 2 11 11 C 1.53120 * 109.50204 * 299.99151 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 C 1.33637 * 126.03385 * 89.72277 * 16 15 14 18 18 N 1.31790 * 114.50125 * 179.78922 * 17 16 15 19 19 C 1.29022 * 117.12152 * 0.51413 * 18 17 16 20 20 S 1.70976 * 110.16828 * 359.71816 * 19 18 17 21 21 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 22 22 H 0.97006 * 119.99407 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 24 24 H 1.09001 * 109.57675 * 302.34822 * 11 9 7 25 25 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 26 26 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 27 27 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 28 28 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 29 29 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 30 30 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 31 31 H 1.08004 * 122.75165 * 359.97111 * 17 16 15 32 32 H 1.07999 * 124.91463 * 179.67731 * 19 18 17 33 33 H 1.08993 * 109.46639 * 178.24333 * 21 14 13 34 34 H 1.09010 * 109.45973 * 58.27499 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6254 -2.5590 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6943 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1063 16 6 1.6341 -7.3347 -0.3330 17 6 1.2618 -7.8268 -1.5183 18 7 0.5748 -8.9495 -1.4525 19 6 0.3382 -9.4263 -0.2772 20 16 1.0261 -8.4160 0.9183 21 6 2.2447 -3.6630 0.0060 22 1 -0.4849 0.8401 -0.0004 23 1 -0.3679 -1.7788 1.2288 24 1 0.9900 -2.4814 2.1413 25 1 -0.9964 -4.0165 0.4025 26 1 -0.9415 -4.0154 2.1823 27 1 1.3358 -4.9816 2.1198 28 1 0.1875 -6.0213 1.2435 29 1 3.0943 -5.9072 -0.9529 30 1 3.0177 -6.1750 0.8051 31 1 1.5065 -7.3456 -2.4537 32 1 -0.2150 -10.3322 -0.0775 33 1 2.8640 -3.6159 -0.8897 34 1 2.8790 -3.5947 0.8899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259934735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:31 Heat of formation + Delta-G solvation = 41.264721 kcal Electronic energy + Delta-G solvation = -16407.160843 eV Core-core repulsion = 13852.422593 eV Total energy + Delta-G solvation = -2554.738250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62175 -38.17538 -34.16239 -32.19826 -30.36441 -29.69484 -26.50381 -24.99020 -24.12330 -21.93815 -21.50235 -19.78731 -18.65284 -17.96295 -16.43149 -15.57649 -15.32973 -14.61118 -14.18160 -13.97425 -13.87095 -13.75380 -13.30048 -12.69099 -12.37490 -12.19990 -11.87575 -11.61964 -11.03392 -10.94142 -10.72287 -10.70384 -10.18936 -9.87402 -9.65881 -9.49832 -9.24905 -9.15684 -8.81613 -8.72418 -8.31250 -7.76384 -5.98227 -4.04896 0.73458 1.37279 1.76603 2.89505 3.31689 3.36735 3.38771 4.34344 4.39074 4.56629 4.95861 5.20153 5.28592 5.31785 5.60308 5.71725 5.74862 5.90929 6.03344 6.20048 6.22114 6.34526 6.46275 6.68121 6.71828 6.91674 7.18734 7.34787 7.57792 7.69264 7.72020 7.75835 8.06010 8.15858 8.45726 8.98795 9.59520 11.07667 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.049228 B = 0.004832 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.643597 B = 5793.733606 C = 5973.778132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.058 3.942 14 N -0.533 5.533 15 C 0.127 3.873 16 C -0.190 4.190 17 C 0.040 3.960 18 N -0.470 5.470 19 C 0.007 3.993 20 S 0.108 5.892 21 C 0.068 3.932 22 H 0.260 0.740 23 H 0.091 0.909 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.177 0.823 32 H 0.195 0.805 33 H 0.062 0.938 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -15.283 2.525 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.070 4.070 14 N -0.258 5.258 15 C -0.004 4.004 16 C -0.311 4.311 17 C -0.111 4.111 18 N -0.184 5.184 19 C -0.291 4.291 20 S 0.359 5.641 21 C -0.058 4.058 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.194 0.806 32 H 0.212 0.788 33 H 0.080 0.920 34 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.263 -15.512 2.727 15.801 hybrid contribution 1.112 1.221 -0.037 1.651 sum 2.375 -14.291 2.690 14.735 Atomic orbital electron populations 1.69884 1.05858 1.26470 1.50446 1.24930 0.94819 0.98945 0.95066 0.86682 0.79613 0.83274 0.78551 1.20289 1.21308 1.20383 1.21092 0.92777 0.90620 1.51025 0.92863 1.18661 0.92569 0.90142 0.94930 0.94705 1.21662 1.00082 0.94690 0.98457 1.21662 0.97119 0.96338 1.00263 1.22159 0.95852 0.99119 0.89914 1.62057 1.23602 1.01617 1.38478 1.20466 0.92491 0.85990 1.01426 1.26005 1.07714 1.02441 0.94948 1.21743 0.98179 0.92318 0.98842 1.66326 1.14704 1.12021 1.25306 1.28291 1.05217 1.04819 0.90724 1.84042 1.48999 1.17536 1.13516 1.22357 0.96541 0.87950 0.98974 0.92971 0.89024 0.95129 0.92110 0.93459 0.95798 0.92300 0.88765 0.94106 0.80611 0.78832 0.91983 0.96057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 11.35 55.43 0.63 -24.56 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.95 8.56 -34.44 -0.29 -14.25 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.38 2.27 -91.69 -0.21 1.17 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.60 5.02 -26.61 -0.13 -2.74 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.45 16 13 C 0.06 1.02 5.30 -3.83 -0.02 1.00 16 14 N -0.53 -9.61 4.65 -236.11 -1.10 -10.71 16 15 C 0.13 1.84 5.50 -4.98 -0.03 1.81 16 16 C -0.19 -2.59 5.32 -35.92 -0.19 -2.78 16 17 C 0.04 0.55 11.25 -19.18 -0.22 0.34 16 18 N -0.47 -6.52 10.54 -15.75 -0.17 -6.68 16 19 C 0.01 0.08 12.23 51.58 0.63 0.71 16 20 S 0.11 1.23 21.70 -107.50 -2.33 -1.10 16 21 C 0.07 1.40 4.68 -3.83 -0.02 1.39 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.95 5.76 -51.93 -0.30 0.65 16 29 H 0.09 1.26 7.98 -51.93 -0.41 0.85 16 30 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.18 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.19 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 34 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 287.66 15.07 4.34 4.34 Total: -1.00 -28.95 287.66 -9.18 -38.13 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.79 Total: -1.31 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.74 Total: -14.14 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.63 Total: -41.95 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.33 Total: -1.10 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.95 -9.18 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.398 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds