Wall clock time and date at job start Sun Mar 29 2020 23:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00195 * 2 1 4 4 H 1.48498 * 109.46821 * 239.99689 * 3 2 1 5 5 H 1.48493 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46843 * 119.99741 * 3 2 1 7 7 C 1.37879 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99808 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.54169 * 60.09500 * 9 7 2 11 11 C 1.53120 * 109.50204 * 299.99151 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 C 1.33637 * 126.03385 * 89.72277 * 16 15 14 18 18 N 1.31790 * 114.50125 * 179.78922 * 17 16 15 19 19 C 1.29022 * 117.12152 * 0.51413 * 18 17 16 20 20 S 1.70976 * 110.16828 * 359.71816 * 19 18 17 21 21 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 22 22 H 0.97006 * 119.99407 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 24 24 H 1.09001 * 109.57675 * 302.34822 * 11 9 7 25 25 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 26 26 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 27 27 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 28 28 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 29 29 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 30 30 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 31 31 H 1.08004 * 122.75165 * 359.97111 * 17 16 15 32 32 H 1.07999 * 124.91463 * 179.67731 * 19 18 17 33 33 H 1.08993 * 109.46639 * 178.24333 * 21 14 13 34 34 H 1.09010 * 109.45973 * 58.27499 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6254 -2.5590 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3458 -3.9341 1.2732 13 6 0.6943 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0274 15 6 2.4284 -6.0742 -0.1063 16 6 1.6341 -7.3347 -0.3330 17 6 1.2618 -7.8268 -1.5183 18 7 0.5748 -8.9495 -1.4525 19 6 0.3382 -9.4263 -0.2772 20 16 1.0261 -8.4160 0.9183 21 6 2.2447 -3.6630 0.0060 22 1 -0.4849 0.8401 -0.0004 23 1 -0.3679 -1.7788 1.2288 24 1 0.9900 -2.4814 2.1413 25 1 -0.9964 -4.0165 0.4025 26 1 -0.9415 -4.0154 2.1823 27 1 1.3358 -4.9816 2.1198 28 1 0.1875 -6.0213 1.2435 29 1 3.0943 -5.9072 -0.9529 30 1 3.0177 -6.1750 0.8051 31 1 1.5065 -7.3456 -2.4537 32 1 -0.2150 -10.3322 -0.0775 33 1 2.8640 -3.6159 -0.8897 34 1 2.8790 -3.5947 0.8899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259934735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:31 Heat of formation + Delta-G solvation = 23.052958 kcal Electronic energy + Delta-G solvation = -16407.950564 eV Core-core repulsion = 13852.422593 eV Total energy + Delta-G solvation = -2555.527971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65713 -39.67213 -35.86408 -33.92278 -31.85774 -31.26016 -27.63624 -26.92676 -25.32093 -23.48784 -23.09911 -20.86786 -20.33298 -18.98866 -18.38054 -16.95155 -16.60568 -16.38553 -15.51529 -15.27164 -15.09380 -14.93263 -14.77303 -14.37736 -14.07694 -13.66342 -13.33908 -13.02264 -12.81695 -12.57691 -12.54434 -12.05513 -11.90235 -11.73328 -11.40179 -10.94647 -10.68980 -10.59332 -10.38988 -10.18048 -9.82588 -9.18366 -8.06704 -6.21095 -0.21280 0.45214 0.82969 1.43305 1.44340 1.51898 1.90401 2.44153 3.13557 3.20604 3.49673 3.87391 4.08263 4.17138 4.27111 4.41342 4.44211 4.57456 4.62075 4.72578 4.84600 4.87436 4.96502 5.06875 5.16640 5.23106 5.36795 5.50999 5.64220 5.94087 6.10619 6.19952 6.25170 6.44600 6.77555 6.91627 7.47053 8.97780 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.049228 B = 0.004832 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.643597 B = 5793.733606 C = 5973.778132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.052 3.948 10 H -0.005 1.005 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.064 3.936 14 N -0.545 5.545 15 C 0.131 3.869 16 C -0.215 4.215 17 C 0.034 3.966 18 N -0.502 5.502 19 C 0.019 3.981 20 S 0.141 5.859 21 C 0.083 3.917 22 H 0.260 0.740 23 H 0.057 0.943 24 H 0.025 0.975 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.177 0.823 32 H 0.231 0.769 33 H 0.064 0.936 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 -16.804 3.381 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.064 4.064 14 N -0.270 5.270 15 C 0.001 3.999 16 C -0.336 4.336 17 C -0.117 4.117 18 N -0.216 5.216 19 C -0.279 4.279 20 S 0.393 5.607 21 C -0.045 4.045 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.901 -17.052 3.591 17.529 hybrid contribution 0.869 1.607 -0.302 1.852 sum 2.770 -15.444 3.289 16.032 Atomic orbital electron populations 1.70039 1.07251 1.27101 1.51206 1.25721 0.95610 1.02341 0.94778 0.85676 0.78394 0.79125 0.78837 1.19641 1.21132 1.19599 1.21495 0.93085 0.92024 1.50834 0.92743 1.18586 0.93007 0.91391 0.93655 0.98683 1.21463 0.99174 0.95986 0.97558 1.21572 0.97493 0.94993 1.00723 1.22100 0.95357 0.98930 0.90027 1.61943 1.24450 1.01699 1.38897 1.20435 0.92138 0.84972 1.02324 1.25907 1.08899 1.02846 0.95976 1.21877 0.98048 0.92532 0.99208 1.66377 1.16007 1.12527 1.26669 1.28957 1.03664 1.05271 0.89965 1.83904 1.48105 1.16480 1.12219 1.22007 0.95335 0.88007 0.99105 0.93118 0.92415 0.95617 0.93565 0.91218 0.95117 0.90250 0.87986 0.92991 0.80588 0.75321 0.91742 0.95992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 11.35 21.45 0.24 -53.19 16 2 C 0.01 0.79 5.30 84.65 0.45 1.24 16 3 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.45 8.56 25.60 0.22 -29.23 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.05 2.66 2.27 -11.49 -0.03 2.63 16 10 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 11 C -0.10 -4.97 5.02 30.67 0.15 -4.81 16 12 C -0.11 -4.28 6.09 30.64 0.19 -4.09 16 13 C 0.06 2.14 5.30 86.32 0.46 2.59 16 14 N -0.55 -19.11 4.65 -900.93 -4.19 -23.29 16 15 C 0.13 3.57 5.50 85.56 0.47 4.04 16 16 C -0.21 -5.44 5.32 24.64 0.13 -5.31 16 17 C 0.03 0.90 11.25 83.65 0.94 1.84 16 18 N -0.50 -12.91 10.54 -203.74 -2.15 -15.06 16 19 C 0.02 0.36 12.23 130.66 1.60 1.96 16 20 S 0.14 2.80 21.70 -56.49 -1.23 1.57 16 21 C 0.08 3.38 4.68 86.33 0.40 3.79 16 22 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 23 H 0.06 3.15 6.15 -2.39 -0.01 3.14 16 24 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 2.34 5.76 -2.39 -0.01 2.33 16 29 H 0.10 2.58 7.98 -2.39 -0.02 2.56 16 30 H 0.05 1.31 8.12 -2.39 -0.02 1.30 16 31 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.23 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.06 2.56 8.01 -2.39 -0.02 2.54 16 34 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -63.00 287.66 0.77 -62.23 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.08 Total: 7.57 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 4.98 Total: -25.35 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -6.09 Total: -91.54 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.23 Total: 1.57 kcal Total: -63.00 0.77 -62.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.278 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds