Wall clock time and date at job start Sun Mar 29 2020 23:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47274 * 2 1 4 4 O 1.21321 * 120.00458 * 359.97438 * 3 2 1 5 5 C 1.46642 * 120.00368 * 180.02562 * 3 2 1 6 6 C 1.40098 * 120.19454 * 0.02562 * 5 3 2 7 7 C 1.37548 * 119.90873 * 179.97438 * 6 5 3 8 8 C 1.38938 * 120.30548 * 0.02562 * 7 6 5 9 9 F 1.35102 * 119.79954 * 179.97438 * 8 7 6 10 10 C 1.38357 * 120.40446 * 359.74159 * 8 7 6 11 11 C 1.38549 * 120.08349 * 0.50992 * 10 8 7 12 12 O 1.35607 * 120.15551 * 179.76684 * 11 10 8 13 13 C 1.42903 * 116.99771 * 359.72685 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.09000 * 109.46972 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47230 * 299.99960 * 1 2 3 24 24 H 1.09008 * 109.46990 * 60.00140 * 1 2 3 25 25 H 1.09000 * 109.47230 * 240.00040 * 2 1 3 26 26 H 1.09002 * 109.47400 * 120.00033 * 2 1 3 27 27 H 1.08000 * 120.04539 * 0.02562 * 6 5 3 28 28 H 1.07990 * 119.84665 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.96506 * 180.25746 * 10 8 7 30 30 H 1.09002 * 109.47382 * 59.99704 * 13 12 11 31 31 H 1.09001 * 109.46938 * 299.99691 * 13 12 11 32 32 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3430 -0.0005 5 6 3.4740 1.6888 -0.0006 6 6 4.3881 0.6271 -0.0017 7 6 5.7391 0.8852 -0.0027 8 6 6.2026 2.1950 -0.0022 9 9 7.5318 2.4368 -0.0027 10 6 5.3113 3.2532 -0.0060 11 6 3.9470 3.0121 0.0004 12 8 3.0721 4.0482 0.0014 13 6 3.6265 5.3653 0.0019 14 6 2.5117 6.3794 0.0025 15 1 1.4829 6.0510 0.0029 16 6 2.8053 7.7266 0.0035 17 7 4.0581 8.1265 0.0035 18 14 1.4236 8.9836 0.0049 19 1 1.0578 9.3156 1.4054 20 1 1.8731 10.2142 -0.6943 21 1 0.2413 8.4204 -0.6952 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.0324 -0.3927 -0.0025 28 1 6.4428 0.0660 -0.0040 29 1 5.6794 4.2685 -0.0097 30 1 4.2406 5.5014 -0.8883 31 1 4.2414 5.5004 0.8917 32 1 4.2647 9.0743 0.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285245008.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:53 Heat of formation + Delta-G solvation = -128.296305 kcal Electronic energy + Delta-G solvation = -17966.740671 eV Core-core repulsion = 14806.143776 eV Total energy + Delta-G solvation = -3160.596895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.09991 -41.44711 -39.72192 -38.17433 -35.14513 -33.79103 -31.99060 -31.38130 -29.63744 -26.24455 -25.55638 -23.76411 -22.99391 -20.64844 -19.54913 -18.75578 -17.85071 -17.62415 -17.05561 -16.95167 -16.44757 -16.44424 -16.10660 -15.89250 -15.35138 -15.08141 -14.25225 -14.13837 -13.94551 -13.37881 -13.28170 -13.10917 -12.97445 -12.82269 -12.67203 -12.33936 -12.15735 -12.01442 -11.90141 -11.52084 -10.79081 -10.49616 -10.04888 -9.30901 -8.46605 -6.61023 -0.45356 0.26890 1.33498 1.36774 1.43565 1.49220 2.19250 2.53705 2.62244 2.87765 3.00002 3.17424 3.64780 3.96032 3.98420 4.13898 4.30730 4.38491 4.48684 4.57323 4.82228 4.83706 4.90055 4.98397 5.05583 5.08759 5.15326 5.24539 5.41597 5.43866 5.69324 5.73752 6.37960 6.63925 6.82550 7.10670 8.65821 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.006978 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.952804 B = 4011.385669 C = 5639.588679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.154 4.154 3 C 0.381 3.619 4 O -0.490 6.490 5 C -0.246 4.246 6 C 0.019 3.981 7 C -0.197 4.197 8 C 0.163 3.837 9 F -0.137 7.137 10 C -0.289 4.289 11 C 0.183 3.817 12 O -0.303 6.303 13 C 0.206 3.794 14 C -0.557 4.557 15 H 0.060 0.940 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.988 3.012 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.267 1.267 22 H 0.093 0.907 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.206 0.794 28 H 0.186 0.814 29 H 0.119 0.881 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -20.296 0.008 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C 0.261 3.739 4 O -0.367 6.367 5 C -0.248 4.248 6 C 0.002 3.998 7 C -0.216 4.216 8 C 0.144 3.856 9 F -0.115 7.115 10 C -0.309 4.309 11 C 0.134 3.866 12 O -0.214 6.214 13 C 0.133 3.867 14 C -0.594 4.594 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.191 1.191 22 H 0.111 0.889 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.223 0.777 28 H 0.203 0.797 29 H 0.137 0.863 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.737 -19.617 0.005 19.631 hybrid contribution 0.348 1.812 0.007 1.846 sum 1.085 -17.804 0.013 17.838 Atomic orbital electron populations 1.21615 0.94624 1.02800 1.01281 1.22055 0.97524 0.92061 1.07460 1.23065 0.86885 0.93170 0.70827 1.90651 1.58923 1.49792 1.37364 1.20513 0.97657 0.90167 1.16420 1.21647 0.90180 0.99447 0.88554 1.21371 0.97811 0.94045 1.08340 1.17920 0.76444 0.94353 0.96920 1.91498 1.31264 1.95550 1.93215 1.21256 0.93096 1.00617 1.15932 1.19794 0.88290 0.89505 0.89038 1.86289 1.34924 1.15402 1.84818 1.20313 0.95160 0.76224 0.95032 1.21246 0.93274 0.91046 1.53882 0.92139 1.25956 0.99381 0.99984 0.93262 1.70044 1.19523 1.17330 1.49360 0.85118 0.77787 0.77013 0.79139 1.18921 1.19145 1.19149 0.88870 0.94251 0.94265 0.84940 0.84939 0.77700 0.79718 0.86301 0.97832 0.97842 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.20 71.98 0.66 -2.22 16 2 C -0.15 -2.61 5.02 29.85 0.15 -2.46 16 3 C 0.38 12.10 7.10 27.88 0.20 12.30 16 4 O -0.49 -21.85 14.79 17.82 0.26 -21.59 16 5 C -0.25 -7.83 5.88 -20.07 -0.12 -7.95 16 6 C 0.02 0.37 9.46 22.56 0.21 0.58 16 7 C -0.20 -4.04 10.00 22.27 0.22 -3.82 16 8 C 0.16 5.00 7.30 22.47 0.16 5.17 16 9 F -0.14 -4.18 17.26 44.97 0.78 -3.40 16 10 C -0.29 -11.62 9.00 22.37 0.20 -11.41 16 11 C 0.18 7.91 6.70 22.90 0.15 8.07 16 12 O -0.30 -16.49 8.19 -68.20 -0.56 -17.05 16 13 C 0.21 12.18 4.49 71.24 0.32 12.50 16 14 C -0.56 -34.83 9.43 25.60 0.24 -34.59 16 15 H 0.06 3.84 7.81 -2.91 -0.02 3.82 16 16 C 0.01 0.82 5.46 84.66 0.46 1.28 16 17 N -0.92 -56.16 13.29 21.45 0.28 -55.87 16 18 Si 0.99 45.69 29.54 68.60 2.03 47.72 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 24 H 0.04 0.93 8.10 -2.38 -0.02 0.91 16 25 H 0.13 1.31 8.08 -2.39 -0.02 1.29 16 26 H 0.13 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.21 1.35 7.04 -2.91 -0.02 1.33 16 28 H 0.19 2.13 8.06 -2.92 -0.02 2.10 16 29 H 0.12 5.41 6.29 -2.91 -0.02 5.39 16 30 H 0.00 0.24 7.65 -2.39 -0.02 0.22 16 31 H 0.00 0.23 7.67 -2.39 -0.02 0.21 16 32 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -79.61 286.78 6.80 -72.81 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 1.13 Total: -0.06 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 2.87 Total: -22.56 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.29 Total: -38.64 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.61 6.80 -72.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285245008.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.483 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds