Wall clock time and date at job start Sun Mar 29 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32287 * 120.39834 * 2 1 4 4 C 1.32487 * 120.74109 * 180.02562 * 3 2 1 5 5 N 1.38410 * 119.21629 * 179.72019 * 4 3 2 6 6 C 1.46498 * 119.99824 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46910 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47060 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99901 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00425 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99881 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00352 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47053 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46883 * 119.99675 * 12 10 8 15 15 H 1.48496 * 109.47167 * 239.99685 * 12 10 8 16 16 N 1.32509 * 121.56275 * 0.02562 * 4 3 2 17 17 C 1.32255 * 120.73742 * 0.02562 * 16 4 3 18 18 C 1.38577 * 120.40266 * 180.02562 * 2 1 3 19 19 N 1.48007 * 120.72073 * 359.97438 * 18 2 1 20 20 O 1.21803 * 119.99892 * 186.42127 * 19 18 2 21 21 O 1.21797 * 120.00002 * 6.42031 * 19 18 2 22 22 H 1.08992 * 109.47146 * 96.31672 * 1 2 3 23 23 H 1.09002 * 109.46753 * 216.31978 * 1 2 3 24 24 H 1.09004 * 109.47124 * 336.31387 * 1 2 3 25 25 H 0.96998 * 119.99987 * 0.02562 * 5 4 3 26 26 H 1.09005 * 109.46799 * 300.00050 * 6 5 4 27 27 H 1.09001 * 109.46884 * 59.99696 * 6 5 4 28 28 H 1.08992 * 109.47256 * 299.99879 * 7 6 5 29 29 H 1.08998 * 109.47142 * 60.00321 * 7 6 5 30 30 H 0.96997 * 120.00281 * 180.02562 * 11 10 8 31 31 H 1.08005 * 120.39895 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1764 1.1410 0.0000 4 6 3.5012 1.1489 -0.0005 5 7 4.1696 2.3610 -0.0064 6 6 5.6343 2.3897 -0.0076 7 6 6.1158 3.8419 -0.0138 8 6 7.6225 3.8715 -0.0144 9 1 8.1808 2.9470 -0.0103 10 6 8.2884 5.0788 -0.0191 11 7 7.6086 6.2047 -0.0235 12 14 10.1560 5.1155 -0.0191 13 1 10.6784 3.7255 -0.0143 14 1 10.6372 5.8203 -1.2344 15 1 10.6371 5.8299 1.1905 16 7 4.2016 0.0240 -0.0015 17 6 3.5938 -1.1506 -0.0026 18 6 2.2083 -1.1952 -0.0005 19 7 1.4936 -2.4912 -0.0005 20 8 2.1174 -3.5308 0.1170 21 8 0.2816 -2.5183 -0.1180 22 1 -0.3633 -0.1131 -1.0213 23 1 -0.3633 -0.8280 0.6087 24 1 -0.3633 0.9411 0.4129 25 1 3.6682 3.1913 -0.0097 26 1 6.0083 1.8870 0.8844 27 1 6.0069 1.8791 -0.8956 28 1 5.7418 4.3449 -0.9054 29 1 5.7432 4.3520 0.8745 30 1 8.0770 7.0541 -0.0272 31 1 4.1701 -2.0641 -0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295061308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:43 Heat of formation + Delta-G solvation = 42.156618 kcal Electronic energy + Delta-G solvation = -17514.279783 eV Core-core repulsion = 14413.286994 eV Total energy + Delta-G solvation = -3100.992788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36537 -41.10912 -36.81476 -36.56841 -34.61821 -33.59565 -32.24100 -29.65809 -29.28827 -26.21710 -24.90424 -23.71914 -22.57298 -21.21265 -19.31795 -19.04615 -18.19352 -17.66510 -17.31621 -16.34699 -15.71704 -14.92519 -14.61559 -14.34707 -14.15299 -13.61053 -13.27927 -12.94273 -12.61537 -12.41590 -11.53764 -11.44940 -11.37976 -11.18650 -11.08886 -10.89009 -10.76554 -10.71238 -10.24442 -9.85143 -9.58860 -9.45870 -8.61724 -8.38991 -6.24177 -4.28722 -0.16529 0.70067 1.28698 1.37751 2.68724 3.19093 3.27472 3.31428 3.36758 3.62711 3.86738 4.22547 4.27511 4.35810 5.03355 5.13408 5.27913 5.35560 5.43238 5.74565 5.91624 5.99792 6.29770 6.41205 6.45581 6.74939 7.18408 7.35834 7.36333 7.66533 7.71729 7.92683 8.10009 8.76789 9.37397 10.87326 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051527 B = 0.003717 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.273095 B = 7530.241384 C = 8046.427051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.298 3.702 3 N -0.567 5.567 4 C 0.593 3.407 5 N -0.651 5.651 6 C 0.124 3.876 7 C 0.010 3.990 8 C -0.525 4.525 9 H 0.062 0.938 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.899 3.101 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 N -0.552 5.552 17 C 0.277 3.723 18 C -0.245 4.245 19 N 0.062 4.938 20 O -0.180 6.180 21 O -0.175 6.175 22 H 0.101 0.899 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.420 0.580 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -11.460 0.031 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.144 3.856 3 N -0.293 5.293 4 C 0.237 3.763 5 N -0.278 5.278 6 C 0.003 3.997 7 C -0.027 4.027 8 C -0.564 4.564 9 H 0.080 0.920 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.727 3.273 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.208 1.208 16 N -0.277 5.277 17 C 0.102 3.898 18 C -0.341 4.341 19 N 0.573 4.427 20 O -0.390 6.390 21 O -0.385 6.385 22 H 0.119 0.881 23 H 0.126 0.874 24 H 0.106 0.894 25 H 0.259 0.741 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.445 -9.600 0.032 14.187 hybrid contribution 0.336 -0.533 -0.020 0.631 sum -10.109 -10.133 0.012 14.313 Atomic orbital electron populations 1.21312 0.85822 1.05490 1.05338 1.21405 0.98253 0.84866 0.81043 1.68223 1.07625 1.28037 1.25443 1.19910 0.84833 0.87740 0.83801 1.45372 1.09329 1.03202 1.69924 1.22115 0.73260 1.02485 1.01866 1.19381 0.97124 0.87916 0.98284 1.20989 0.90386 0.92866 1.52131 0.91977 1.25004 0.98997 0.95495 0.94708 1.69958 1.35741 0.97489 1.49789 0.86415 0.84836 0.78338 0.77753 1.19500 1.20829 1.20823 1.68438 1.38656 0.96815 1.23766 1.22998 0.88780 0.96975 0.81005 1.22302 0.95315 0.85239 1.31251 1.42980 1.00750 1.02018 0.96914 1.94532 1.68525 1.21468 1.54487 1.94446 0.96308 1.93681 1.54091 0.88083 0.87365 0.89390 0.74118 0.91363 0.91356 0.95646 0.95646 0.92684 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.94 36.01 0.32 -0.82 16 2 C 0.30 3.76 6.82 -82.27 -0.56 3.20 16 3 N -0.57 -8.14 10.40 -10.15 -0.11 -8.24 16 4 C 0.59 9.24 8.43 -322.79 -2.72 6.52 16 5 N -0.65 -10.51 5.70 -62.30 -0.36 -10.86 16 6 C 0.12 2.32 5.59 -4.04 -0.02 2.29 16 7 C 0.01 0.24 5.09 -27.88 -0.14 0.10 16 8 C -0.53 -13.66 9.11 -34.44 -0.31 -13.98 16 9 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 12 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 N -0.55 -8.33 9.59 -13.93 -0.13 -8.46 16 17 C 0.28 3.50 10.82 -17.23 -0.19 3.31 16 18 C -0.24 -3.14 6.87 -79.69 -0.55 -3.69 16 19 N 0.06 0.81 4.45 34.09 0.15 0.97 16 20 O -0.18 -2.46 18.56 -29.46 -0.55 -3.01 16 21 O -0.17 -2.25 15.54 -29.46 -0.46 -2.71 16 22 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.11 0.99 5.93 -51.93 -0.31 0.68 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.42 6.31 8.59 -40.82 -0.35 5.96 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.19 1.85 7.71 -52.48 -0.40 1.45 16 LS Contribution 282.64 15.07 4.26 4.26 Total: -1.00 -28.49 282.64 -8.88 -37.37 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.14 Total: 1.15 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -4.27 Total: -1.54 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.29 Total: -50.95 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -1.00 Total: -5.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.49 -8.88 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295061308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.524 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds