Wall clock time and date at job start Sun Mar 29 2020 23:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38282 * 119.93924 * 2 1 4 4 C 1.38271 * 120.15239 * 180.29496 * 3 2 1 5 5 C 1.38317 * 120.04014 * 359.45085 * 4 3 2 6 6 F 1.35102 * 120.05236 * 180.25053 * 5 4 3 7 7 C 1.39041 * 119.89102 * 0.26826 * 5 4 3 8 8 N 1.40077 * 120.07734 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00014 * 145.34378 * 8 7 5 10 10 O 1.21581 * 119.99852 * 4.45027 * 9 8 7 11 11 N 1.34770 * 119.99626 * 184.45254 * 9 8 7 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47258 * 180.02562 * 12 11 9 14 14 H 1.08008 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00298 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99532 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47082 * 60.00040 * 17 15 13 19 19 H 1.48502 * 109.47149 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46997 * 300.00121 * 17 15 13 21 21 C 1.38150 * 119.94752 * 179.74103 * 2 1 3 22 22 H 1.09002 * 109.47359 * 270.25113 * 1 2 3 23 23 H 1.08999 * 109.47112 * 30.25453 * 1 2 3 24 24 H 1.09005 * 109.46887 * 150.25746 * 1 2 3 25 25 H 1.07993 * 119.92848 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.98122 * 179.72116 * 4 3 2 27 27 H 0.97002 * 119.99848 * 325.34368 * 8 7 5 28 28 H 0.96996 * 120.00588 * 359.97438 * 11 9 8 29 29 H 1.08990 * 109.47372 * 300.00387 * 12 11 9 30 30 H 1.08997 * 109.46502 * 60.00589 * 12 11 9 31 31 H 0.97000 * 119.99745 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.02005 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5799 1.2034 -0.0062 5 6 4.2768 0.0087 -0.0009 6 9 5.6278 0.0135 -0.0018 7 6 3.5847 -1.1972 0.0050 8 7 4.2865 -2.4094 0.0109 9 6 3.7932 -3.4704 0.6798 10 8 2.7014 -3.4007 1.2101 11 7 4.5104 -4.6086 0.7609 12 6 3.9744 -5.7618 1.4885 13 6 4.9639 -6.8969 1.4298 14 1 5.8988 -6.7717 0.9036 15 6 4.6759 -8.0952 2.0479 16 7 3.5374 -8.2477 2.6883 17 14 5.9028 -9.5020 1.9758 18 1 7.1818 -9.0757 2.5982 19 1 5.3590 -10.6713 2.7122 20 1 6.1425 -9.8775 0.5592 21 6 2.1967 -1.1970 0.0054 22 1 -0.3634 0.0045 1.0277 23 1 -0.3633 0.8877 -0.5178 24 1 -0.3633 -0.8923 -0.5099 25 1 1.6551 2.1323 0.0004 26 1 4.1161 2.1409 -0.0107 27 1 5.1275 -2.4853 -0.4664 28 1 5.3813 -4.6644 0.3375 29 1 3.7996 -5.4861 2.5283 30 1 3.0350 -6.0743 1.0326 31 1 3.3349 -9.0907 3.1235 32 1 1.6562 -2.1320 0.0092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336085570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:47 Heat of formation + Delta-G solvation = -79.100074 kcal Electronic energy + Delta-G solvation = -17665.306783 eV Core-core repulsion = 14539.135949 eV Total energy + Delta-G solvation = -3126.170835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.90237 -41.61733 -39.73993 -36.45649 -35.91335 -34.41694 -33.09644 -31.00545 -28.99769 -27.54135 -25.20228 -23.93059 -22.49023 -21.89843 -20.01144 -18.91680 -18.14940 -17.94384 -17.31058 -16.77398 -16.67194 -16.35029 -15.83301 -15.22464 -15.09514 -14.86884 -14.53174 -14.37381 -14.08404 -14.04154 -13.04298 -12.94526 -12.85806 -12.69678 -12.67740 -12.39354 -12.22832 -11.52913 -11.47897 -11.13152 -10.81722 -10.00657 -9.64483 -9.08232 -8.30209 -6.46966 0.09913 0.25467 1.42521 1.47331 1.53847 1.60332 2.01133 2.37780 2.63848 3.04993 3.19345 3.29793 3.78706 3.92565 4.24352 4.30020 4.46420 4.78379 4.85430 4.91577 5.02328 5.10518 5.19212 5.22477 5.29688 5.38812 5.40852 5.55616 5.63894 5.79540 5.98438 6.05173 6.62759 7.05665 7.22665 7.49419 8.81803 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.037133 B = 0.004370 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.862099 B = 6405.611706 C = 7064.900308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.104 4.104 4 C -0.122 4.122 5 C 0.045 3.955 6 F -0.144 7.144 7 C 0.122 3.878 8 N -0.677 5.677 9 C 0.693 3.307 10 O -0.620 6.620 11 N -0.714 5.714 12 C 0.285 3.715 13 C -0.559 4.559 14 H 0.083 0.917 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.986 3.014 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.123 4.123 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.060 0.940 25 H 0.172 0.828 26 H 0.169 0.831 27 H 0.420 0.580 28 H 0.406 0.594 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.270 0.730 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 19.007 -8.217 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.141 4.141 5 C 0.023 3.977 6 F -0.122 7.122 7 C 0.025 3.975 8 N -0.326 5.326 9 C 0.394 3.606 10 O -0.501 6.501 11 N -0.368 5.368 12 C 0.162 3.838 13 C -0.597 4.597 14 H 0.101 0.899 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.809 3.191 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.144 4.144 22 H 0.094 0.906 23 H 0.117 0.883 24 H 0.079 0.921 25 H 0.189 0.811 26 H 0.187 0.813 27 H 0.257 0.743 28 H 0.242 0.758 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.079 0.921 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.739 18.816 -7.604 20.308 hybrid contribution 1.375 -1.313 -0.087 1.903 sum 0.636 17.503 -7.692 19.129 Atomic orbital electron populations 1.20846 0.88868 1.03943 1.03180 1.20232 0.97985 0.91942 0.97908 1.21268 0.92814 0.98624 0.99507 1.21328 0.95294 0.96425 1.01086 1.17660 0.76799 0.93477 1.09771 1.91452 1.28901 1.97334 1.94548 1.17800 0.92145 0.83763 1.03745 1.42360 1.26944 1.08912 1.54370 1.16191 0.84160 0.80832 0.79436 1.90842 1.22234 1.83342 1.53663 1.45363 1.22021 1.11982 1.57388 1.18501 0.93955 0.81732 0.89584 1.21554 1.04509 0.97539 1.36063 0.89869 1.26031 0.97616 1.01749 0.93915 1.70126 1.24910 1.27006 1.34689 0.85195 0.78200 0.76855 0.78883 1.18785 1.20961 1.18677 1.21175 0.91882 0.99871 1.01491 0.90602 0.88340 0.92105 0.81060 0.81307 0.74255 0.75798 0.99270 0.98978 0.92144 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 10.01 71.24 0.71 -1.29 16 2 C -0.08 -1.87 5.88 -19.87 -0.12 -1.99 16 3 C -0.10 -1.83 9.69 22.29 0.22 -1.61 16 4 C -0.12 -2.36 10.02 22.30 0.22 -2.14 16 5 C 0.04 1.18 7.31 22.48 0.16 1.34 16 6 F -0.14 -3.78 16.96 44.97 0.76 -3.02 16 7 C 0.12 3.86 6.31 38.15 0.24 4.11 16 8 N -0.68 -22.61 5.24 -317.00 -1.66 -24.27 16 9 C 0.69 29.92 8.41 179.06 1.51 31.42 16 10 O -0.62 -31.71 13.76 -3.97 -0.05 -31.77 16 11 N -0.71 -31.33 5.55 -482.31 -2.68 -34.01 16 12 C 0.29 15.79 5.43 85.63 0.46 16.26 16 13 C -0.56 -30.49 9.28 25.60 0.24 -30.25 16 14 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 17 Si 0.99 42.26 29.54 68.60 2.03 44.29 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 C -0.12 -3.95 8.35 22.38 0.19 -3.76 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 24 H 0.06 1.19 8.08 -2.38 -0.02 1.17 16 25 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 26 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.42 11.22 8.68 -92.71 -0.80 10.41 16 28 H 0.41 14.77 8.34 -92.71 -0.77 13.99 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.12 4.63 6.20 -2.91 -0.02 4.61 16 Total: -1.00 -71.74 287.63 2.57 -69.17 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.41 Total: 22.27 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 4.30 Total: 12.93 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.05 Total: -113.88 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.77 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.76 Total: -3.02 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -71.74 2.57 -69.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336085570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.930 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds