Wall clock time and date at job start Sun Mar 29 2020 23:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.92669 * 2 1 4 4 C 1.38141 * 120.11381 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.95898 * 359.97438 * 4 3 2 6 6 N 1.40068 * 120.08259 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00183 * 24.76532 * 6 5 4 8 8 O 1.21591 * 119.99777 * 5.64494 * 7 6 5 9 9 N 1.34773 * 120.00146 * 185.64010 * 7 6 5 10 10 C 1.46503 * 119.99879 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46936 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99918 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99946 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99841 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47295 * 60.00226 * 15 13 11 17 17 H 1.48500 * 109.46915 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46919 * 299.99762 * 15 13 11 19 19 C 1.39044 * 119.84043 * 359.97438 * 5 4 3 20 20 F 1.35100 * 120.05606 * 179.97438 * 19 5 4 21 21 C 1.38277 * 119.92086 * 180.20468 * 2 1 3 22 22 H 1.09006 * 109.47090 * 90.00256 * 1 2 3 23 23 H 1.09002 * 109.47406 * 210.00095 * 1 2 3 24 24 H 1.09000 * 109.47561 * 330.00328 * 1 2 3 25 25 H 1.08000 * 119.93960 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.02317 * 179.97438 * 4 3 2 27 27 H 0.97004 * 119.99980 * 204.77751 * 6 5 4 28 28 H 0.96999 * 120.00052 * 0.02562 * 9 7 6 29 29 H 1.09005 * 109.47278 * 299.99760 * 10 9 7 30 30 H 1.08992 * 109.47311 * 59.99833 * 10 9 7 31 31 H 0.96998 * 119.99870 * 179.97438 * 14 13 11 32 32 H 1.08003 * 119.97936 * 0.02860 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5782 1.2029 0.0005 5 6 4.2753 0.0026 0.0016 6 7 5.6760 0.0041 0.0016 7 6 6.3487 1.0652 0.4896 8 8 5.7442 1.9754 1.0229 9 7 7.6915 1.1172 0.3866 10 6 8.4228 2.2703 0.9175 11 6 9.8986 2.0836 0.6763 12 1 10.2561 1.1948 0.1778 13 6 10.7924 3.0476 1.0921 14 7 10.3570 4.1302 1.6987 15 14 12.6218 2.8158 0.7937 16 1 12.8744 2.6976 -0.6648 17 1 13.3631 3.9847 1.3318 18 1 13.0823 1.5807 1.4776 19 6 3.5798 -1.2014 0.0027 20 9 4.2539 -2.3722 0.0032 21 6 2.1967 -1.1985 -0.0043 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6546 2.1324 -0.0004 26 1 4.1156 2.1398 0.0001 27 1 6.1618 -0.7584 -0.3498 28 1 8.1737 0.3912 -0.0391 29 1 8.0849 3.1772 0.4160 30 1 8.2373 2.3566 1.9881 31 1 10.9859 4.8082 1.9915 32 1 1.6550 -2.1328 -0.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336100270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:42 Heat of formation + Delta-G solvation = -56.425337 kcal Electronic energy + Delta-G solvation = -17570.741030 eV Core-core repulsion = 14445.553446 eV Total energy + Delta-G solvation = -3125.187584 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.85342 -40.21037 -38.51353 -35.02625 -34.20974 -32.51712 -31.27893 -30.50306 -27.57708 -26.05189 -23.21475 -22.73468 -21.45564 -20.31260 -18.40768 -17.74230 -16.80899 -16.24927 -15.92143 -15.53749 -15.04846 -14.82042 -14.44477 -13.94179 -13.78921 -13.69188 -13.41720 -13.11047 -12.45778 -12.11599 -12.02672 -11.80327 -11.76056 -11.37448 -11.01674 -10.91840 -10.34068 -10.19402 -9.47749 -9.45446 -8.79463 -8.76613 -8.12234 -7.68872 -6.20243 -4.27542 1.17839 1.29215 3.01367 3.23696 3.28822 3.30662 3.45017 3.88035 4.21487 4.28769 4.67606 4.78983 4.88862 5.16058 5.17718 5.19914 5.45696 5.48350 5.62817 5.81437 5.97308 6.17711 6.29370 6.53171 6.60866 6.93502 7.09033 7.32675 7.43594 7.46875 7.75397 7.93819 8.61264 8.76959 9.09148 9.39197 10.89856 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.048855 B = 0.004026 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.984843 B = 6953.910306 C = 7453.555018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.105 4.105 4 C -0.105 4.105 5 C 0.152 3.848 6 N -0.690 5.690 7 C 0.692 3.308 8 O -0.580 6.580 9 N -0.719 5.719 10 C 0.265 3.735 11 C -0.546 4.546 12 H 0.063 0.937 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.054 3.946 20 F -0.142 7.142 21 C -0.133 4.133 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.161 0.839 27 H 0.406 0.594 28 H 0.390 0.610 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.267 0.733 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 -9.829 -5.184 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.124 4.124 4 C -0.125 4.125 5 C 0.054 3.946 6 N -0.336 5.336 7 C 0.392 3.608 8 O -0.458 6.458 9 N -0.370 5.370 10 C 0.145 3.855 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.032 3.968 20 F -0.121 7.121 21 C -0.153 4.153 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.148 0.852 26 H 0.178 0.822 27 H 0.241 0.759 28 H 0.222 0.778 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.949 -8.772 -4.585 18.771 hybrid contribution 1.715 -1.075 -0.439 2.071 sum -14.234 -9.846 -5.024 18.022 Atomic orbital electron populations 1.20728 0.90747 1.02800 1.02245 1.19658 0.96200 0.92247 1.01457 1.21026 0.93577 0.97717 1.00106 1.21522 0.93939 0.98260 0.98813 1.17622 0.82811 0.92877 1.01301 1.42753 1.03966 1.21485 1.65418 1.16121 0.83017 0.82042 0.79613 1.90840 1.67548 1.38216 1.49194 1.45815 1.03425 1.25953 1.61799 1.19085 0.89711 0.82049 0.94675 1.21166 0.90710 1.06124 1.40414 0.91891 1.24939 0.99570 0.94783 0.94630 1.69960 1.35332 1.08700 1.38183 0.86444 0.83894 0.77765 0.78629 1.20037 1.21023 1.20047 1.17346 0.90170 0.79701 1.09589 1.91452 1.80413 1.45689 1.94537 1.20719 0.91211 0.99192 1.04141 0.91230 0.91661 0.91357 0.85243 0.82182 0.75878 0.77767 0.95348 0.95392 0.92304 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -1.04 5.88 -104.60 -0.62 -1.65 16 3 C -0.11 -1.31 9.69 -39.60 -0.38 -1.70 16 4 C -0.10 -1.64 8.72 -39.41 -0.34 -1.98 16 5 C 0.15 2.39 6.44 -83.59 -0.54 1.85 16 6 N -0.69 -11.21 5.32 -14.17 -0.08 -11.28 16 7 C 0.69 14.13 8.37 -86.92 -0.73 13.40 16 8 O -0.58 -13.75 13.51 5.29 0.07 -13.68 16 9 N -0.72 -15.07 5.55 -66.41 -0.37 -15.44 16 10 C 0.27 6.94 5.43 -5.19 -0.03 6.92 16 11 C -0.55 -14.64 9.28 -34.44 -0.32 -14.95 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.88 -25.77 13.29 55.43 0.74 -25.04 16 15 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.05 0.75 7.31 -39.26 -0.29 0.47 16 20 F -0.14 -1.96 16.82 2.25 0.04 -1.92 16 21 C -0.13 -1.55 9.67 -39.54 -0.38 -1.93 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 24 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 26 H 0.16 2.87 5.79 -52.48 -0.30 2.57 16 27 H 0.41 5.44 8.47 -40.82 -0.35 5.09 16 28 H 0.39 6.97 8.34 -40.82 -0.34 6.62 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 286.81 15.07 4.32 4.32 Total: -1.00 -31.17 286.81 -7.14 -38.31 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.48 Total: 7.45 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.36 Total: 1.64 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.29 Total: -51.76 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.07 Total: -13.68 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.17 -7.14 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336100270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.120 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds