Wall clock time and date at job start Sun Mar 29 2020 23:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.92669 * 2 1 4 4 C 1.38141 * 120.11381 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.95898 * 359.97438 * 4 3 2 6 6 N 1.40068 * 120.08259 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00183 * 24.76532 * 6 5 4 8 8 O 1.21591 * 119.99777 * 5.64494 * 7 6 5 9 9 N 1.34773 * 120.00146 * 185.64010 * 7 6 5 10 10 C 1.46503 * 119.99879 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46936 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99918 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99946 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99841 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47295 * 60.00226 * 15 13 11 17 17 H 1.48500 * 109.46915 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46919 * 299.99762 * 15 13 11 19 19 C 1.39044 * 119.84043 * 359.97438 * 5 4 3 20 20 F 1.35100 * 120.05606 * 179.97438 * 19 5 4 21 21 C 1.38277 * 119.92086 * 180.20468 * 2 1 3 22 22 H 1.09006 * 109.47090 * 90.00256 * 1 2 3 23 23 H 1.09002 * 109.47406 * 210.00095 * 1 2 3 24 24 H 1.09000 * 109.47561 * 330.00328 * 1 2 3 25 25 H 1.08000 * 119.93960 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.02317 * 179.97438 * 4 3 2 27 27 H 0.97004 * 119.99980 * 204.77751 * 6 5 4 28 28 H 0.96999 * 120.00052 * 0.02562 * 9 7 6 29 29 H 1.09005 * 109.47278 * 299.99760 * 10 9 7 30 30 H 1.08992 * 109.47311 * 59.99833 * 10 9 7 31 31 H 0.96998 * 119.99870 * 179.97438 * 14 13 11 32 32 H 1.08003 * 119.97936 * 0.02860 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5782 1.2029 0.0005 5 6 4.2753 0.0026 0.0016 6 7 5.6760 0.0041 0.0016 7 6 6.3487 1.0652 0.4896 8 8 5.7442 1.9754 1.0229 9 7 7.6915 1.1172 0.3866 10 6 8.4228 2.2703 0.9175 11 6 9.8986 2.0836 0.6763 12 1 10.2561 1.1948 0.1778 13 6 10.7924 3.0476 1.0921 14 7 10.3570 4.1302 1.6987 15 14 12.6218 2.8158 0.7937 16 1 12.8744 2.6976 -0.6648 17 1 13.3631 3.9847 1.3318 18 1 13.0823 1.5807 1.4776 19 6 3.5798 -1.2014 0.0027 20 9 4.2539 -2.3722 0.0032 21 6 2.1967 -1.1985 -0.0043 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6546 2.1324 -0.0004 26 1 4.1156 2.1398 0.0001 27 1 6.1618 -0.7584 -0.3498 28 1 8.1737 0.3912 -0.0391 29 1 8.0849 3.1772 0.4160 30 1 8.2373 2.3566 1.9881 31 1 10.9859 4.8082 1.9915 32 1 1.6550 -2.1328 -0.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336100270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:42 Heat of formation + Delta-G solvation = -77.535570 kcal Electronic energy + Delta-G solvation = -17571.656439 eV Core-core repulsion = 14445.553446 eV Total energy + Delta-G solvation = -3126.102993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.93607 -41.65664 -39.74660 -36.54204 -35.95971 -34.46235 -32.40659 -31.53562 -29.39370 -27.23399 -24.83455 -24.10804 -22.68985 -21.85966 -19.99241 -19.10124 -18.04691 -17.86194 -17.23889 -16.81581 -16.71830 -16.39653 -16.01396 -15.19426 -15.08727 -14.78626 -14.46116 -14.31338 -14.10866 -14.06116 -13.15907 -12.95782 -12.87473 -12.69298 -12.65550 -12.42698 -12.22348 -11.52708 -11.48142 -11.06431 -10.81330 -9.98028 -9.82506 -8.93213 -8.30234 -6.46898 0.10814 0.23890 1.42424 1.47319 1.53341 1.59357 1.98834 2.37709 2.65865 3.04949 3.15077 3.27389 3.73705 3.95320 4.21892 4.30231 4.49247 4.72466 4.92682 4.94309 5.04718 5.09633 5.14090 5.22703 5.32696 5.41090 5.45622 5.54826 5.62081 5.79537 5.97866 6.05222 6.62815 7.04318 7.22477 7.47913 8.81709 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.048855 B = 0.004026 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.984843 B = 6953.910306 C = 7453.555018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.080 4.080 3 C -0.106 4.106 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.674 5.674 7 C 0.693 3.307 8 O -0.618 6.618 9 N -0.714 5.714 10 C 0.285 3.715 11 C -0.559 4.559 12 H 0.083 0.917 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.986 3.014 16 H -0.262 1.262 17 H -0.285 1.285 18 H -0.263 1.263 19 C 0.053 3.947 20 F -0.142 7.142 21 C -0.128 4.128 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.128 0.872 27 H 0.420 0.580 28 H 0.407 0.593 29 H -0.007 1.007 30 H -0.009 1.009 31 H 0.270 0.730 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 -11.930 -6.068 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.148 4.148 5 C 0.021 3.979 6 N -0.322 5.322 7 C 0.394 3.606 8 O -0.498 6.498 9 N -0.367 5.367 10 C 0.162 3.838 11 C -0.597 4.597 12 H 0.101 0.899 13 C -0.194 4.194 14 N -0.567 5.567 15 Si 0.809 3.191 16 H -0.187 1.187 17 H -0.210 1.210 18 H -0.188 1.188 19 C 0.031 3.969 20 F -0.121 7.121 21 C -0.147 4.147 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.168 0.832 26 H 0.146 0.854 27 H 0.258 0.742 28 H 0.242 0.758 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.079 0.921 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.957 -10.949 -5.506 20.922 hybrid contribution 1.806 -0.446 -0.172 1.869 sum -15.151 -11.395 -5.679 19.790 Atomic orbital electron populations 1.20836 0.87649 1.04200 1.03738 1.20102 0.98251 0.91195 0.98586 1.21285 0.92287 0.99619 0.99288 1.21376 0.95476 0.97098 1.00823 1.17838 0.82171 0.93942 1.03931 1.42390 1.04534 1.20522 1.64712 1.16182 0.82654 0.82516 0.79286 1.90822 1.68246 1.40005 1.50775 1.45383 1.03792 1.25292 1.62195 1.18513 0.90576 0.82603 0.92137 1.21558 0.90756 1.06941 1.40431 0.89856 1.26035 1.05154 0.94196 0.93984 1.70122 1.37339 1.09851 1.39384 0.85196 0.76936 0.77918 0.79097 1.18680 1.20998 1.18774 1.17471 0.91000 0.78906 1.09516 1.91453 1.80635 1.45436 1.94549 1.21141 0.90200 1.00865 1.02446 0.89501 0.89946 0.90394 0.83222 0.85414 0.74248 0.75772 0.98909 0.99148 0.92139 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.23 0.71 -0.47 16 2 C -0.08 -1.52 5.88 -19.85 -0.12 -1.64 16 3 C -0.11 -2.52 9.69 22.26 0.22 -2.31 16 4 C -0.13 -4.08 8.72 22.38 0.20 -3.89 16 5 C 0.12 3.74 6.44 38.15 0.25 3.98 16 6 N -0.67 -22.35 5.32 -316.99 -1.69 -24.04 16 7 C 0.69 29.58 8.37 179.06 1.50 31.08 16 8 O -0.62 -31.20 13.51 -4.00 -0.05 -31.26 16 9 N -0.71 -30.97 5.55 -482.29 -2.68 -33.65 16 10 C 0.28 15.64 5.43 85.63 0.46 16.11 16 11 C -0.56 -30.35 9.28 25.60 0.24 -30.12 16 12 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 13 C 0.01 0.35 5.46 84.66 0.46 0.81 16 14 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 15 Si 0.99 42.15 29.54 68.60 2.03 44.18 16 16 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C 0.05 1.40 7.31 22.48 0.16 1.56 16 20 F -0.14 -3.66 16.82 44.97 0.76 -2.91 16 21 C -0.13 -2.58 9.67 22.30 0.22 -2.36 16 22 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 24 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 25 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 26 H 0.13 4.96 5.79 -2.91 -0.02 4.94 16 27 H 0.42 11.19 8.47 -92.71 -0.79 10.40 16 28 H 0.41 14.60 8.34 -92.71 -0.77 13.82 16 29 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.41 286.81 2.55 -67.86 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.39 Total: 22.45 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 4.30 Total: 12.76 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.08 Total: -113.09 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.05 Total: -31.26 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.76 Total: -2.91 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -70.41 2.55 -67.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336100270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.680 kcal (2) G-P(sol) polarization free energy of solvation -70.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds