Wall clock time and date at job start Sun Mar 29 2020 23:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99424 * 2 1 4 4 C 1.50701 * 109.46844 * 179.97438 * 3 2 1 5 5 N 1.31960 * 118.87951 * 270.02013 * 4 3 2 6 6 C 1.32207 * 121.19861 * 179.74770 * 5 4 3 7 7 C 1.39820 * 118.99203 * 0.48465 * 6 5 4 8 8 C 1.47337 * 121.00442 * 179.78572 * 7 6 5 9 9 O 1.21627 * 120.00417 * 185.86380 * 8 7 6 10 10 N 1.34784 * 119.99730 * 5.86411 * 8 7 6 11 11 C 1.36907 * 119.99932 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99971 * 359.72713 * 11 10 8 13 13 C 1.39017 * 119.99744 * 180.02562 * 11 10 8 14 14 N 1.31381 * 120.00267 * 359.72287 * 13 11 10 15 15 Si 1.86799 * 120.00057 * 179.72467 * 13 11 10 16 16 H 1.48505 * 109.47128 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47492 * 119.99823 * 15 13 11 18 18 H 1.48501 * 109.47454 * 239.99927 * 15 13 11 19 19 C 1.41099 * 118.00079 * 359.51203 * 7 6 5 20 20 N 1.37885 * 120.64385 * 180.26902 * 19 7 6 21 21 N 1.31686 * 118.87742 * 90.00658 * 4 3 2 22 22 H 1.09007 * 109.46801 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47240 * 299.99446 * 1 2 3 24 24 H 1.09004 * 109.47361 * 60.00116 * 1 2 3 25 25 H 1.09002 * 109.47722 * 60.00300 * 3 2 1 26 26 H 1.09003 * 109.47718 * 299.99945 * 3 2 1 27 27 H 1.08006 * 120.50449 * 180.25064 * 6 5 4 28 28 H 0.97001 * 119.99284 * 359.97438 * 10 8 7 29 29 H 0.96996 * 120.00527 * 180.02562 * 14 13 11 30 30 H 0.97001 * 119.99797 * 17.42620 * 20 19 7 31 31 H 0.97001 * 119.99643 * 197.41980 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.1473 1.1361 1.1564 6 6 5.4637 1.0268 1.2105 7 6 6.1890 0.9747 0.0162 8 6 7.6577 0.8579 0.0248 9 8 8.2790 0.9213 -1.0189 10 7 8.3129 0.6809 1.1893 11 6 9.6776 0.5729 1.1973 12 1 10.2289 0.6252 0.2701 13 6 10.3533 0.3897 2.3984 14 7 9.6826 0.3257 3.5263 15 14 12.2148 0.2347 2.4086 16 1 12.7280 0.3401 1.0191 17 1 12.7977 1.3224 3.2348 18 1 12.5989 -1.0810 2.9802 19 6 5.4717 1.0313 -1.1975 20 7 6.1316 0.9785 -2.4070 21 7 4.1469 1.1363 -1.1522 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 5.9715 0.9824 2.1627 28 1 7.8173 0.6307 2.0217 29 1 10.1540 0.1983 4.3644 30 1 7.0447 0.6536 -2.4475 31 1 5.6827 1.2662 -3.2173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336646754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:24 Heat of formation + Delta-G solvation = -53.472815 kcal Electronic energy + Delta-G solvation = -17865.195697 eV Core-core repulsion = 14760.056106 eV Total energy + Delta-G solvation = -3105.139592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17387 -39.98151 -38.69600 -36.89416 -35.81987 -34.26707 -33.32063 -31.82608 -29.52640 -27.23221 -26.57575 -24.95937 -23.90628 -21.73556 -20.22215 -19.38625 -18.54989 -18.03312 -17.56361 -17.09994 -16.66107 -16.29072 -16.20328 -15.89760 -15.71961 -15.15899 -15.00009 -14.73073 -13.68421 -13.53683 -13.19923 -12.97715 -12.83361 -12.54487 -12.43751 -12.25933 -12.10137 -11.63071 -11.06415 -10.67934 -10.52806 -10.33148 -10.15418 -9.42207 -8.56277 -6.00484 -0.49020 0.25310 1.38757 1.44092 1.58093 1.94854 2.20279 2.28493 2.58625 2.89590 3.01547 3.22814 3.28694 3.44730 3.83433 3.98656 4.15210 4.37737 4.44051 4.59651 4.61491 4.69674 4.91976 5.20535 5.35754 5.70026 5.87836 6.15373 6.20004 6.46791 6.71771 6.99980 7.16761 7.38953 7.92443 8.60721 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.038021 B = 0.004806 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.253296 B = 5824.519861 C = 6429.867758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.139 3.861 4 C 0.351 3.649 5 N -0.554 5.554 6 C 0.198 3.802 7 C -0.290 4.290 8 C 0.487 3.513 9 O -0.624 6.624 10 N -0.545 5.545 11 C -0.333 4.333 12 H 0.092 0.908 13 C -0.008 4.008 14 N -0.908 5.908 15 Si 1.000 3.000 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.271 1.271 19 C 0.467 3.533 20 N -0.804 5.804 21 N -0.570 5.570 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.179 0.821 28 H 0.397 0.603 29 H 0.283 0.717 30 H 0.424 0.576 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 1.700 -4.349 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C 0.061 3.939 4 C 0.081 3.919 5 N -0.274 5.274 6 C 0.034 3.966 7 C -0.304 4.304 8 C 0.275 3.725 9 O -0.514 6.514 10 N -0.179 5.179 11 C -0.462 4.462 12 H 0.110 0.890 13 C -0.210 4.210 14 N -0.547 5.547 15 Si 0.822 3.178 16 H -0.193 1.193 17 H -0.195 1.195 18 H -0.196 1.196 19 C 0.217 3.783 20 N -0.354 5.354 21 N -0.297 5.297 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.195 0.805 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.265 0.735 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.277 1.597 -4.810 15.150 hybrid contribution 1.661 -0.044 0.259 1.681 sum -12.616 1.553 -4.551 13.502 Atomic orbital electron populations 1.23004 0.78005 1.04134 1.01656 1.87894 1.22596 1.26884 1.95794 1.21076 0.82802 0.86085 1.03971 1.23183 0.97833 0.88120 0.82798 1.68217 1.09448 1.20151 1.29589 1.23390 0.89289 0.86374 0.97533 1.21217 0.95338 1.18193 0.95678 1.17563 0.85961 0.84516 0.84419 1.90323 1.68802 1.60180 1.32055 1.41784 1.07498 1.60952 1.07631 1.19876 0.82320 1.48638 0.95350 0.89044 1.26187 1.05438 0.95553 0.93838 1.69649 1.38751 1.47443 0.98886 0.84771 0.76021 0.78350 0.78615 1.19304 1.19525 1.19574 1.18538 0.87646 0.85133 0.86999 1.42683 1.18966 1.68617 1.05146 1.67893 1.06670 1.24034 1.31125 0.88563 0.92250 0.92247 0.88550 0.88702 0.80452 0.76782 0.90726 0.73521 0.75689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -10.66 10.69 -148.98 -1.59 -12.26 16 3 C 0.14 3.35 6.36 71.24 0.45 3.80 16 4 C 0.35 11.63 7.27 138.73 1.01 12.64 16 5 N -0.55 -19.66 10.30 -186.92 -1.93 -21.59 16 6 C 0.20 7.46 10.79 85.02 0.92 8.38 16 7 C -0.29 -12.00 5.92 -19.80 -0.12 -12.12 16 8 C 0.49 23.56 7.70 86.64 0.67 24.23 16 9 O -0.62 -32.32 13.49 -4.12 -0.06 -32.37 16 10 N -0.55 -27.61 5.24 -310.06 -1.62 -29.23 16 11 C -0.33 -18.08 9.68 84.09 0.81 -17.27 16 12 H 0.09 5.21 7.15 -2.91 -0.02 5.19 16 13 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 14 N -0.91 -47.03 13.05 21.68 0.28 -46.75 16 15 Si 1.00 40.80 29.55 68.60 2.03 42.83 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 19 C 0.47 17.68 7.84 133.76 1.05 18.73 16 20 N -0.80 -26.78 8.71 -54.55 -0.48 -27.26 16 21 N -0.57 -19.91 10.35 -184.70 -1.91 -21.83 16 22 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.18 6.22 6.57 -2.91 -0.02 6.20 16 28 H 0.40 19.15 6.06 -92.71 -0.56 18.59 16 29 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.42 15.61 5.95 -92.71 -0.55 15.06 16 31 H 0.41 10.82 8.95 -92.71 -0.83 9.99 16 Total: -1.00 -64.70 278.47 0.50 -64.19 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.73 Total: 44.17 kcal Atomic # 6 Polarization: 33.58 SS G_CDS: 6.51 Total: 40.09 kcal Atomic # 7 Polarization: -141.00 SS G_CDS: -5.65 Total: -146.65 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.65 Total: -44.63 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -64.70 0.50 -64.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336646754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.719 kcal (2) G-P(sol) polarization free energy of solvation -64.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds