Wall clock time and date at job start Sun Mar 29 2020 23:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99694 * 2 1 4 4 H 1.48505 * 109.47404 * 269.99681 * 3 2 1 5 5 H 1.48501 * 109.47353 * 30.00061 * 3 2 1 6 6 H 1.48505 * 109.47337 * 149.99928 * 3 2 1 7 7 C 1.37873 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00109 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47399 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00160 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00321 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47657 * 180.02562 * 14 13 11 16 16 C 1.38232 * 119.59260 * 94.99267 * 15 14 13 17 17 C 1.38596 * 119.18886 * 180.02562 * 16 15 14 18 18 C 1.38879 * 118.39652 * 0.25621 * 17 16 15 19 19 F 1.35106 * 120.44068 * 179.74732 * 18 17 16 20 20 C 1.38422 * 119.11596 * 359.51901 * 18 17 16 21 21 N 1.31848 * 119.58665 * 275.02099 * 15 14 13 22 22 H 0.96998 * 120.00614 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47311 * 59.99889 * 9 7 2 24 24 H 1.09004 * 109.47038 * 299.99945 * 9 7 2 25 25 H 1.09002 * 109.47126 * 59.99597 * 10 9 7 26 26 H 1.08997 * 109.46499 * 300.00011 * 10 9 7 27 27 H 0.97000 * 120.00061 * 359.97438 * 13 11 10 28 28 H 1.09002 * 109.47537 * 59.99456 * 14 13 11 29 29 H 1.09004 * 109.46651 * 299.99611 * 14 13 11 30 30 H 1.08002 * 120.40687 * 0.02599 * 16 15 14 31 31 H 1.08002 * 120.79700 * 179.97438 * 17 16 15 32 32 H 1.07999 * 119.63454 * 180.20814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5286 -2.6364 0.0022 12 8 6.1350 -1.5859 0.0026 13 7 6.2025 -3.8035 0.0028 14 6 7.6675 -3.8035 0.0046 15 6 8.1700 -5.2242 0.0043 16 6 8.4976 -5.8322 -1.1931 17 6 8.9584 -7.1393 -1.1836 18 6 9.0681 -7.7921 0.0372 19 9 9.5078 -9.0684 0.0940 20 6 8.7253 -7.1162 1.1956 21 7 8.2911 -5.8721 1.1463 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6586 -3.1501 -0.8892 26 1 3.6580 -3.1504 0.8907 27 1 5.7176 -4.6436 0.0029 28 1 8.0299 -3.2897 0.8950 29 1 8.0318 -3.2895 -0.8850 30 1 8.3958 -5.2952 -2.1246 31 1 9.2215 -7.6395 -2.1039 32 1 8.8106 -7.6148 2.1499 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360363144.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:02 Heat of formation + Delta-G solvation = -56.687414 kcal Electronic energy + Delta-G solvation = -17060.085208 eV Core-core repulsion = 13934.886259 eV Total energy + Delta-G solvation = -3125.198949 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.43024 -40.69700 -39.14075 -34.94474 -33.47141 -32.98770 -31.76862 -31.04837 -27.37365 -25.46831 -24.37748 -22.59259 -21.20309 -19.77908 -18.13421 -17.74963 -17.44545 -16.63760 -16.29452 -15.90047 -15.42616 -15.23137 -14.43669 -14.40315 -14.07838 -13.77436 -13.43768 -13.27616 -13.05834 -12.56300 -12.35366 -12.13785 -11.41096 -10.95133 -10.43566 -10.16656 -10.06807 -10.04316 -9.79070 -9.57649 -9.18977 -9.09863 -8.95548 -8.49812 -6.02065 -4.00889 0.34456 0.60441 2.96499 3.09491 3.38832 3.45454 3.48545 3.56583 3.62521 3.84344 4.13410 4.26741 4.36885 4.51927 4.87382 5.16497 5.18554 5.33447 5.36170 5.40422 5.57181 5.69373 6.08098 6.10203 6.10384 6.50221 6.69492 7.36187 7.37061 7.44579 7.70403 7.80062 8.50146 8.61883 9.00999 9.60929 11.10789 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.054365 B = 0.003382 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.916981 B = 8277.555617 C = 8492.052784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.539 6.539 13 N -0.736 5.736 14 C 0.171 3.829 15 C 0.103 3.897 16 C -0.123 4.123 17 C -0.109 4.109 18 C 0.049 3.951 19 F -0.129 7.129 20 C 0.077 3.923 21 N -0.441 5.441 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.400 0.600 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.510 -16.652 -1.908 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.302 3.698 12 O -0.414 6.414 13 N -0.391 5.391 14 C 0.047 3.953 15 C -0.035 4.035 16 C -0.144 4.144 17 C -0.136 4.136 18 C 0.028 3.972 19 F -0.108 7.108 20 C -0.082 4.082 21 N -0.149 5.149 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.234 0.766 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 19.588 -15.347 -1.126 24.910 hybrid contribution 0.506 -0.402 -0.805 1.032 sum 20.094 -15.749 -1.931 25.603 Atomic orbital electron populations 1.69909 1.06313 1.26980 1.51092 1.24975 0.94710 0.99256 0.94333 0.86790 0.80647 0.83358 0.78725 1.20253 1.21462 1.18476 1.21115 0.89294 0.94567 1.51323 0.90945 1.19377 0.96396 0.90168 0.97710 1.21673 0.87664 1.03339 1.03437 1.21565 0.91581 0.82509 0.74184 1.90664 1.70738 1.31340 1.48689 1.46114 1.05396 1.09589 1.77967 1.20026 0.81913 0.89394 1.03957 1.21418 0.96879 0.96806 0.88389 1.22026 0.97958 0.94395 0.99998 1.21715 0.98893 0.95290 0.97672 1.18891 1.01537 0.80838 0.95958 1.91541 1.86855 1.35228 1.97188 1.22976 0.96578 0.90828 0.97809 1.67608 1.10692 1.07464 1.29151 0.92718 0.95757 0.96241 0.89564 0.89491 0.76645 0.89634 0.89755 0.83211 0.83204 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.32 5.64 -27.88 -0.16 -2.48 16 11 C 0.51 9.12 7.83 -10.99 -0.09 9.04 16 12 O -0.54 -11.66 15.98 5.55 0.09 -11.57 16 13 N -0.74 -9.63 5.55 -61.47 -0.34 -9.97 16 14 C 0.17 1.96 5.98 -5.20 -0.03 1.93 16 15 C 0.10 0.99 6.15 -82.59 -0.51 0.49 16 16 C -0.12 -0.91 9.72 -39.45 -0.38 -1.29 16 17 C -0.11 -0.74 10.16 -39.21 -0.40 -1.14 16 18 C 0.05 0.39 7.35 -39.28 -0.29 0.10 16 19 F -0.13 -1.08 17.28 2.25 0.04 -1.04 16 20 C 0.08 0.65 11.17 -17.47 -0.20 0.46 16 21 N -0.44 -4.62 10.27 -9.42 -0.10 -4.72 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 24 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 25 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 27 H 0.40 4.36 8.46 -40.82 -0.35 4.02 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -34.34 289.81 -6.06 -40.40 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.65 Total: -1.70 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.57 Total: -6.37 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.34 Total: -41.99 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.34 -6.06 -40.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360363144.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.287 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds