Wall clock time and date at job start Sun Mar 29 2020 23:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47195 * 179.97438 * 11 10 9 13 13 C 1.46968 * 111.00288 * 189.91627 * 12 11 10 14 14 C 1.53179 * 109.64716 * 164.42549 * 13 12 11 15 15 C 1.52197 * 108.13845 * 50.45464 * 14 13 12 16 16 N 1.32265 * 125.07782 * 163.22785 * 15 14 13 17 17 C 1.28780 * 117.79980 * 180.20249 * 16 15 14 18 18 S 1.70962 * 110.16830 * 359.96850 * 17 16 15 19 19 C 1.34793 * 121.68390 * 343.32582 * 15 14 13 20 20 C 1.47225 * 111.00164 * 66.04580 * 12 11 10 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 26 26 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 27 27 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 28 28 H 1.09005 * 109.44106 * 284.45660 * 13 12 11 29 29 H 1.08994 * 109.44583 * 44.35906 * 13 12 11 30 30 H 1.09000 * 109.69953 * 290.80714 * 14 13 12 31 31 H 1.09003 * 109.79725 * 170.15222 * 14 13 12 32 32 H 1.08001 * 124.91881 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.67078 * 294.25258 * 20 12 11 34 34 H 1.08998 * 109.66823 * 54.74596 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 7 2.4347 -6.1036 -0.0024 13 6 1.7497 -7.3822 -0.2392 14 6 2.7763 -8.4541 -0.6181 15 6 3.8912 -8.4295 0.4176 16 7 4.7750 -9.3953 0.6061 17 6 5.6591 -9.2290 1.5276 18 16 5.4329 -7.7185 2.2957 19 6 4.0622 -7.3824 1.2491 20 6 3.2017 -6.1426 1.2537 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.8725 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 0.8532 -5.0450 0.8876 27 1 0.8540 -5.0446 -0.8922 28 1 1.2257 -7.6863 0.6670 29 1 1.0317 -7.2643 -1.0507 30 1 3.1858 -8.2381 -1.6049 31 1 2.3009 -9.4349 -0.6237 32 1 6.4317 -9.9406 1.7788 33 1 3.8338 -5.2574 1.3253 34 1 2.5167 -6.1738 2.1010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446070041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:30 Heat of formation + Delta-G solvation = 35.453425 kcal Electronic energy + Delta-G solvation = -15870.055458 eV Core-core repulsion = 13315.065212 eV Total energy + Delta-G solvation = -2554.990246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22852 -37.72980 -34.12931 -32.39901 -30.86293 -30.33884 -26.83518 -25.08414 -24.36712 -22.74921 -21.61710 -19.97769 -18.41738 -18.28008 -16.28908 -15.96741 -15.34115 -15.03325 -14.48714 -14.40546 -14.25839 -13.74011 -13.43414 -12.82563 -12.39731 -12.26473 -12.14280 -11.80402 -11.38361 -11.25602 -10.99288 -10.82126 -10.52692 -10.49162 -9.73030 -9.66560 -9.35430 -9.32805 -9.06888 -8.72329 -8.34407 -8.18945 -5.99706 -4.01744 0.63828 1.24626 1.66523 2.70594 3.32602 3.38729 3.42191 3.94378 4.05169 4.47181 4.70797 4.91087 5.00484 5.18700 5.26283 5.36336 5.39988 5.63017 5.67195 5.77193 5.79348 5.84420 5.97210 6.17607 6.25346 6.63997 6.71730 7.04276 7.20907 7.27518 7.64027 7.67907 7.82157 8.00485 8.43710 9.05376 9.62417 11.11744 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035601 B = 0.004152 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.300559 B = 6741.402921 C = 7330.937111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.057 3.943 12 N -0.534 5.534 13 C 0.051 3.949 14 C -0.031 4.031 15 C 0.063 3.937 16 N -0.469 5.469 17 C 0.011 3.989 18 S 0.125 5.875 19 C -0.215 4.215 20 C 0.131 3.869 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.198 0.802 33 H 0.100 0.900 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -18.011 3.554 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.259 5.259 13 C -0.078 4.078 14 C -0.072 4.072 15 C -0.068 4.068 16 N -0.182 5.182 17 C -0.287 4.287 18 S 0.378 5.622 19 C -0.337 4.337 20 C 0.001 3.999 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.035 0.965 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.214 0.786 33 H 0.118 0.882 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.324 -17.825 3.691 20.016 hybrid contribution -0.585 0.701 0.116 0.920 sum 7.738 -17.124 3.807 19.173 Atomic orbital electron populations 1.69969 1.06056 1.26560 1.51025 1.25020 0.94839 0.99243 0.95362 0.86603 0.79847 0.83492 0.78130 1.20642 1.21252 1.19887 1.21243 0.93048 0.91028 1.50368 0.92687 1.19076 0.94009 0.91358 0.97152 1.21671 0.99229 0.92653 1.00867 1.22370 0.93401 0.90500 1.00730 1.62245 1.27293 1.03419 1.32913 1.22152 0.95309 0.89396 1.00898 1.20449 0.91657 0.98987 0.96070 1.20894 0.97959 0.88670 0.99269 1.65790 1.04159 1.30489 1.17809 1.28140 1.02632 1.00490 0.97421 1.83869 1.25725 1.16336 1.36316 1.26140 1.02641 1.02534 1.02351 1.20633 0.94734 0.92890 0.91631 0.93037 0.96785 0.96522 0.92419 0.93554 0.94948 0.90572 0.94501 0.89460 0.89243 0.89790 0.78562 0.88233 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.16 5.08 -26.73 -0.14 -2.30 16 11 C 0.06 0.95 4.95 -3.83 -0.02 0.93 16 12 N -0.53 -7.94 4.66 -235.49 -1.10 -9.04 16 13 C 0.05 0.63 5.49 -3.69 -0.02 0.61 16 14 C -0.03 -0.37 6.52 -27.05 -0.18 -0.55 16 15 C 0.06 0.86 6.86 -82.88 -0.57 0.29 16 16 N -0.47 -6.23 10.51 -11.12 -0.12 -6.35 16 17 C 0.01 0.12 12.23 51.48 0.63 0.75 16 18 S 0.12 1.33 23.21 -107.50 -2.49 -1.17 16 19 C -0.22 -2.88 6.48 -35.42 -0.23 -3.11 16 20 C 0.13 1.85 5.41 -4.69 -0.03 1.83 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.92 6.69 -51.93 -0.35 0.58 16 26 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.08 1.25 7.87 -51.93 -0.41 0.84 16 28 H 0.04 0.44 8.06 -51.93 -0.42 0.03 16 29 H 0.09 0.97 7.82 -51.93 -0.41 0.56 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.20 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.10 1.47 6.77 -51.93 -0.35 1.12 16 34 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -31.29 293.26 -9.52 -40.81 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -4.85 Total: -4.53 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.10 Total: -14.61 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.48 Total: -41.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.29 -9.52 -40.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446070041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.261 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds