Wall clock time and date at job start Sun Mar 29 2020 23:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47195 * 179.97438 * 11 10 9 13 13 C 1.46968 * 111.00288 * 189.91627 * 12 11 10 14 14 C 1.53179 * 109.64716 * 164.42549 * 13 12 11 15 15 C 1.52197 * 108.13845 * 50.45464 * 14 13 12 16 16 N 1.32265 * 125.07782 * 163.22785 * 15 14 13 17 17 C 1.28780 * 117.79980 * 180.20249 * 16 15 14 18 18 S 1.70962 * 110.16830 * 359.96850 * 17 16 15 19 19 C 1.34793 * 121.68390 * 343.32582 * 15 14 13 20 20 C 1.47225 * 111.00164 * 66.04580 * 12 11 10 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 26 26 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 27 27 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 28 28 H 1.09005 * 109.44106 * 284.45660 * 13 12 11 29 29 H 1.08994 * 109.44583 * 44.35906 * 13 12 11 30 30 H 1.09000 * 109.69953 * 290.80714 * 14 13 12 31 31 H 1.09003 * 109.79725 * 170.15222 * 14 13 12 32 32 H 1.08001 * 124.91881 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.67078 * 294.25258 * 20 12 11 34 34 H 1.08998 * 109.66823 * 54.74596 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 7 2.4347 -6.1036 -0.0024 13 6 1.7497 -7.3822 -0.2392 14 6 2.7763 -8.4541 -0.6181 15 6 3.8912 -8.4295 0.4176 16 7 4.7750 -9.3953 0.6061 17 6 5.6591 -9.2290 1.5276 18 16 5.4329 -7.7185 2.2957 19 6 4.0622 -7.3824 1.2491 20 6 3.2017 -6.1426 1.2537 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.8725 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 0.8532 -5.0450 0.8876 27 1 0.8540 -5.0446 -0.8922 28 1 1.2257 -7.6863 0.6670 29 1 1.0317 -7.2643 -1.0507 30 1 3.1858 -8.2381 -1.6049 31 1 2.3009 -9.4349 -0.6237 32 1 6.4317 -9.9406 1.7788 33 1 3.8338 -5.2574 1.3253 34 1 2.5167 -6.1738 2.1010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446070041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:30 Heat of formation + Delta-G solvation = 15.261110 kcal Electronic energy + Delta-G solvation = -15870.931062 eV Core-core repulsion = 13315.065212 eV Total energy + Delta-G solvation = -2555.865851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18564 -38.86272 -35.92697 -34.08427 -32.04852 -31.66209 -28.43331 -26.39729 -25.40402 -24.28463 -22.78814 -21.66341 -19.39122 -19.21653 -18.42014 -17.01165 -16.60896 -16.28416 -16.03320 -15.73629 -15.41473 -14.91075 -14.52569 -14.28729 -13.91731 -13.67824 -13.32029 -13.18884 -12.88994 -12.66280 -12.52411 -12.46415 -12.20505 -11.81582 -11.43269 -11.35001 -11.08533 -10.60431 -10.53657 -10.25751 -9.63682 -9.34763 -8.19233 -6.29741 -0.25389 0.37662 0.79327 1.40850 1.41917 1.52982 1.78003 2.41603 2.83646 3.14219 3.19021 3.71019 3.96302 4.03561 4.17738 4.28028 4.32881 4.45460 4.46556 4.60316 4.70937 4.79969 4.85644 4.97477 5.00120 5.11719 5.21177 5.27583 5.53426 5.75128 5.87416 5.99092 6.03150 6.28468 6.74445 6.87069 7.39454 8.92605 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035601 B = 0.004152 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.300559 B = 6741.402921 C = 7330.937111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.070 3.930 12 N -0.542 5.542 13 C 0.053 3.947 14 C -0.029 4.029 15 C 0.053 3.947 16 N -0.499 5.499 17 C 0.023 3.977 18 S 0.157 5.843 19 C -0.248 4.248 20 C 0.133 3.867 21 H 0.263 0.737 22 H -0.008 1.008 23 H -0.006 1.006 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -18.787 3.880 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.058 4.058 12 N -0.267 5.267 13 C -0.075 4.075 14 C -0.069 4.069 15 C -0.078 4.078 16 N -0.213 5.213 17 C -0.274 4.274 18 S 0.411 5.589 19 C -0.369 4.369 20 C 0.003 3.997 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.013 0.987 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.794 -18.615 4.023 21.416 hybrid contribution -0.991 0.877 0.051 1.324 sum 8.803 -17.738 4.074 20.217 Atomic orbital electron populations 1.70093 1.07726 1.27727 1.51793 1.25947 0.95754 1.03241 0.94764 0.85480 0.78690 0.78592 0.78498 1.19812 1.20678 1.18833 1.21688 0.93471 0.92474 1.50395 0.92436 1.18972 0.94385 0.92892 0.94952 1.21404 0.98043 0.92825 1.00610 1.22083 0.93166 0.89612 1.00934 1.62155 1.27046 1.03938 1.33570 1.22215 0.95613 0.88172 1.01532 1.20469 0.91298 0.99523 0.95600 1.21176 0.98378 0.88827 0.99446 1.65858 1.05180 1.30872 1.19341 1.28852 1.02067 1.00741 0.95788 1.83739 1.24028 1.16035 1.35138 1.26145 1.04290 1.02387 1.04102 1.20528 0.94703 0.93124 0.91298 0.92781 0.98919 0.98722 0.93039 0.93311 0.94964 0.90234 0.94128 0.88217 0.89422 0.88084 0.74893 0.89443 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.74 5.08 30.59 0.16 -3.59 16 11 C 0.07 2.32 4.95 86.30 0.43 2.75 16 12 N -0.54 -15.84 4.66 -898.95 -4.19 -20.03 16 13 C 0.05 1.24 5.49 86.35 0.47 1.71 16 14 C -0.03 -0.65 6.52 30.39 0.20 -0.45 16 15 C 0.05 1.38 6.86 42.18 0.29 1.67 16 16 N -0.50 -12.27 10.51 -189.08 -1.99 -14.26 16 17 C 0.02 0.42 12.23 130.69 1.60 2.02 16 18 S 0.16 3.05 23.21 -56.49 -1.31 1.74 16 19 C -0.25 -6.38 6.48 24.96 0.16 -6.22 16 20 C 0.13 3.72 5.41 85.56 0.46 4.18 16 21 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 22 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 23 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 1.96 6.69 -2.38 -0.02 1.95 16 26 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 27 H 0.08 2.59 7.87 -2.39 -0.02 2.57 16 28 H 0.04 0.93 8.06 -2.38 -0.02 0.91 16 29 H 0.10 2.07 7.82 -2.39 -0.02 2.05 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.23 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.09 2.59 6.77 -2.38 -0.02 2.57 16 34 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 Total: -1.00 -66.92 293.26 0.51 -66.41 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.08 Total: 3.02 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 4.61 Total: -26.78 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.89 Total: -90.82 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -66.92 0.51 -66.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446070041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.667 kcal (2) G-P(sol) polarization free energy of solvation -66.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds