Wall clock time and date at job start Sun Mar 29 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32296 * 120.40046 * 2 1 4 4 C 1.32483 * 120.74246 * 180.02562 * 3 2 1 5 5 N 1.38399 * 119.21685 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99882 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46730 * 35.00716 * 6 5 4 8 8 C 1.52999 * 109.47235 * 275.00070 * 6 5 4 9 9 C 1.50703 * 109.46834 * 155.00119 * 6 5 4 10 10 H 1.08000 * 120.00262 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99869 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99784 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00138 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47114 * 90.00310 * 13 11 9 15 15 H 1.48502 * 109.47356 * 210.00201 * 13 11 9 16 16 H 1.48503 * 109.47108 * 330.00548 * 13 11 9 17 17 N 1.32515 * 121.56170 * 0.03010 * 4 3 2 18 18 C 1.32259 * 120.73990 * 359.97151 * 17 4 3 19 19 C 1.38580 * 120.40263 * 180.02562 * 2 1 3 20 20 N 1.48004 * 120.71971 * 359.95294 * 19 2 1 21 21 O 1.21807 * 119.99887 * 186.44719 * 20 19 2 22 22 O 1.21802 * 120.00007 * 6.44596 * 20 19 2 23 23 H 1.08991 * 109.47075 * 96.31704 * 1 2 3 24 24 H 1.09005 * 109.46598 * 216.32034 * 1 2 3 25 25 H 1.08999 * 109.46728 * 336.31910 * 1 2 3 26 26 H 0.97000 * 120.00395 * 0.02746 * 5 4 3 27 27 H 1.09003 * 109.46768 * 60.00385 * 8 6 5 28 28 H 1.09001 * 109.46653 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47413 * 299.99932 * 8 6 5 30 30 H 0.97002 * 119.99230 * 179.97438 * 12 11 9 31 31 H 1.08003 * 120.39790 * 179.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1411 0.0000 4 6 3.5013 1.1490 -0.0005 5 7 4.1696 2.3609 0.0000 6 6 5.6344 2.3896 -0.0011 7 1 6.0136 1.5557 -0.5917 8 6 6.1479 2.2727 1.4354 9 6 6.1108 3.6875 -0.6007 10 1 5.3943 4.4181 -0.9461 11 6 7.4615 3.9428 -0.7076 12 7 8.3341 3.0533 -0.2866 13 14 8.0522 5.5512 -1.4515 14 1 8.1974 6.5686 -0.3795 15 1 9.3646 5.3383 -2.1129 16 1 7.0640 6.0255 -2.4535 17 7 4.2016 0.0240 -0.0016 18 6 3.5939 -1.1507 -0.0017 19 6 2.2083 -1.1952 -0.0005 20 7 1.4935 -2.4912 -0.0001 21 8 2.1174 -3.5308 0.1179 22 8 0.2815 -2.5183 -0.1176 23 1 -0.3633 -0.1131 -1.0213 24 1 -0.3633 -0.8281 0.6087 25 1 -0.3633 0.9411 0.4128 26 1 3.6683 3.1913 0.0012 27 1 5.8033 1.3339 1.8691 28 1 7.2377 2.2936 1.4344 29 1 5.7687 3.1066 2.0259 30 1 9.2844 3.2328 -0.3621 31 1 4.1701 -2.0641 -0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450306483.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:19 Heat of formation + Delta-G solvation = 47.714932 kcal Electronic energy + Delta-G solvation = -18088.728960 eV Core-core repulsion = 14987.977198 eV Total energy + Delta-G solvation = -3100.751762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11540 -40.81327 -36.64728 -36.39104 -34.32280 -33.49490 -31.74123 -29.21766 -28.77761 -25.93894 -25.36067 -23.44945 -22.83414 -20.70138 -19.08865 -18.87758 -18.14519 -17.43345 -16.89672 -16.34641 -15.27343 -15.08875 -14.47442 -13.89871 -13.45143 -13.27417 -12.78480 -12.72306 -12.29600 -12.25343 -11.45166 -11.25434 -11.17903 -10.99912 -10.96736 -10.82129 -10.59384 -10.51489 -10.40939 -10.20497 -9.37082 -9.19258 -8.74246 -7.95384 -6.35795 -4.46898 0.11314 1.01499 1.55776 1.63796 3.08145 3.11965 3.19917 3.23950 3.69615 3.94312 4.14623 4.16609 4.55324 4.68737 4.97954 5.29171 5.45408 5.55995 5.74681 5.93594 6.47484 6.55347 6.65728 6.74986 6.81284 7.09956 7.21919 7.40276 7.57970 7.83928 7.89368 8.00235 8.31089 8.60659 9.21052 10.70081 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045298 B = 0.004727 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.975157 B = 5921.687352 C = 6274.249603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.296 3.704 3 N -0.574 5.574 4 C 0.591 3.409 5 N -0.631 5.631 6 C 0.265 3.735 7 H 0.063 0.937 8 C -0.147 4.147 9 C -0.544 4.544 10 H 0.064 0.936 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.907 3.093 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.273 1.273 17 N -0.544 5.544 18 C 0.274 3.726 19 C -0.253 4.253 20 N 0.066 4.934 21 O -0.187 6.187 22 O -0.183 6.183 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.412 0.588 27 H 0.017 0.983 28 H 0.098 0.902 29 H 0.029 0.971 30 H 0.268 0.732 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -4.668 1.103 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.142 3.858 3 N -0.301 5.301 4 C 0.234 3.766 5 N -0.254 5.254 6 C 0.164 3.836 7 H 0.080 0.920 8 C -0.206 4.206 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.133 4.133 12 N -0.516 5.516 13 Si 0.734 3.266 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 N -0.268 5.268 18 C 0.098 3.902 19 C -0.350 4.350 20 N 0.575 4.425 21 O -0.396 6.396 22 O -0.392 6.392 23 H 0.116 0.884 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.249 0.751 27 H 0.036 0.964 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.728 -3.007 1.114 9.299 hybrid contribution -0.278 0.109 -0.363 0.470 sum -9.007 -2.898 0.751 9.491 Atomic orbital electron populations 1.21265 0.86214 1.05159 1.05109 1.21326 0.98015 0.85044 0.81460 1.68227 1.07884 1.27885 1.26059 1.19997 0.84571 0.88137 0.83854 1.45872 1.10240 1.02358 1.66942 1.19193 0.70254 0.99227 0.94916 0.91957 1.22125 1.04968 0.96968 0.96552 1.21127 0.92421 1.02168 1.42529 0.91760 1.24856 0.96255 0.97405 0.94827 1.69879 1.02224 1.34337 1.45193 0.86355 0.78323 0.82632 0.79312 1.20327 1.20833 1.19739 1.68522 1.38359 0.96693 1.23235 1.22990 0.88655 0.97102 0.81431 1.22238 0.95276 0.84895 1.32633 1.43005 1.00665 1.02134 0.96688 1.94515 1.68547 1.21699 1.54807 1.94423 0.96522 1.93750 1.54493 0.88363 0.87565 0.89687 0.75089 0.96404 0.88398 0.95170 0.92203 0.79564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.94 36.01 0.32 -1.02 16 2 C 0.30 4.39 6.82 -82.27 -0.56 3.83 16 3 N -0.57 -9.62 10.40 -10.15 -0.11 -9.73 16 4 C 0.59 11.02 8.40 -322.80 -2.71 8.31 16 5 N -0.63 -12.38 5.21 -56.92 -0.30 -12.67 16 6 C 0.27 6.08 2.55 -69.08 -0.18 5.90 16 7 H 0.06 1.59 7.50 -51.93 -0.39 1.20 16 8 C -0.15 -3.31 9.27 37.16 0.34 -2.97 16 9 C -0.54 -13.42 8.73 -34.44 -0.30 -13.72 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 12 N -0.88 -23.00 11.32 55.43 0.63 -22.37 16 13 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 N -0.54 -10.04 9.20 -13.93 -0.13 -10.17 16 18 C 0.27 4.25 10.82 -17.22 -0.19 4.06 16 19 C -0.25 -3.84 6.87 -79.69 -0.55 -4.39 16 20 N 0.07 1.00 4.45 34.09 0.15 1.15 16 21 O -0.19 -2.92 18.56 -29.46 -0.55 -3.47 16 22 O -0.18 -2.69 15.54 -29.46 -0.46 -3.15 16 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.11 1.15 5.93 -51.93 -0.31 0.84 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.41 7.42 8.65 -40.82 -0.35 7.06 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.19 2.36 7.71 -52.48 -0.40 1.95 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -26.39 277.75 -8.51 -34.90 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.00 Total: 5.09 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.91 Total: 1.69 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.25 Total: -53.79 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -1.00 Total: -6.62 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.39 -8.51 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450306483.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.614 kcal (2) G-P(sol) polarization free energy of solvation -26.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds