Wall clock time and date at job start Sun Mar 29 2020 23:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38195 * 120.02060 * 2 1 4 4 C 1.38238 * 120.10851 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.15565 * 0.22983 * 4 3 2 6 6 C 1.38268 * 120.04708 * 359.49406 * 5 4 3 7 7 F 1.35092 * 120.06028 * 180.22791 * 6 5 4 8 8 C 1.38761 * 120.02532 * 179.97438 * 2 1 3 9 9 N 1.40072 * 120.07318 * 0.04274 * 8 2 1 10 10 C 1.34776 * 120.00036 * 264.31131 * 9 8 2 11 11 O 1.21585 * 119.99978 * 4.99141 * 10 9 8 12 12 N 1.34783 * 119.99890 * 184.98438 * 10 9 8 13 13 C 1.46498 * 119.99567 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47070 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99518 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00098 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99754 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99971 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47044 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47297 * 120.00398 * 18 16 14 21 21 H 1.48497 * 109.47455 * 240.00617 * 18 16 14 22 22 H 1.09001 * 109.47020 * 90.00086 * 1 2 3 23 23 H 1.09005 * 109.46726 * 209.99784 * 1 2 3 24 24 H 1.08999 * 109.47366 * 330.00106 * 1 2 3 25 25 H 1.07999 * 119.94338 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.91911 * 179.97438 * 4 3 2 27 27 H 1.07999 * 119.97783 * 179.74831 * 5 4 3 28 28 H 0.97008 * 120.00104 * 84.31831 * 9 8 2 29 29 H 0.96993 * 119.99891 * 0.02562 * 12 10 9 30 30 H 1.08995 * 109.47452 * 299.99865 * 13 12 10 31 31 H 1.09005 * 109.47406 * 59.99926 * 13 12 10 32 32 H 0.97002 * 119.99650 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1966 0.0000 4 6 3.5808 1.1987 -0.0005 5 6 4.2774 0.0039 -0.0059 6 6 3.5922 -1.1971 -0.0001 7 9 4.2723 -2.3643 -0.0007 8 6 2.2013 -1.2014 0.0005 9 7 1.5030 -2.4157 0.0002 10 6 1.2666 -3.0574 1.1615 11 8 1.5786 -2.5398 2.2165 12 7 0.6843 -4.2729 1.1533 13 6 0.4269 -4.9702 2.4158 14 6 -0.2266 -6.2982 2.1319 15 1 -0.4295 -6.5933 1.1130 16 6 -0.5646 -7.1367 3.1729 17 7 -0.3171 -6.7774 4.4136 18 14 -1.3740 -8.7831 2.8210 19 1 -1.5419 -8.9488 1.3549 20 1 -0.5196 -9.8774 3.3478 21 1 -2.7036 -8.8321 3.4805 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6578 2.1315 -0.0004 26 1 4.1180 2.1356 -0.0010 27 1 5.3573 0.0089 -0.0104 28 1 1.1897 -2.7947 -0.8360 29 1 0.4357 -4.6859 0.3117 30 1 1.3687 -5.1330 2.9396 31 1 -0.2343 -4.3656 3.0366 32 1 -0.5552 -7.3672 5.1459 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488587488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:51 Heat of formation + Delta-G solvation = -54.428161 kcal Electronic energy + Delta-G solvation = -17945.811839 eV Core-core repulsion = 14820.710859 eV Total energy + Delta-G solvation = -3125.100980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.73914 -40.05347 -38.43807 -34.64508 -34.01408 -32.49244 -32.19249 -29.48546 -27.33062 -26.65295 -23.24813 -22.09299 -21.60400 -20.28755 -18.26868 -17.60735 -16.84871 -16.56447 -15.98656 -15.35154 -15.04565 -14.58927 -14.48169 -13.95316 -13.72347 -13.48934 -13.26379 -13.09678 -12.25198 -11.99512 -11.98314 -11.77144 -11.74038 -11.32366 -10.92677 -10.90866 -10.30587 -9.54890 -9.35935 -9.13721 -8.77082 -8.72472 -8.62908 -7.83044 -6.15132 -4.21805 1.08249 1.14506 3.18389 3.24717 3.32183 3.35529 3.52755 3.83276 4.23754 4.33410 4.69885 4.77485 5.00159 5.12949 5.20451 5.21449 5.48685 5.52279 5.60720 5.86983 5.99926 6.15393 6.24156 6.39377 6.60626 6.99804 7.12980 7.47163 7.52035 7.56175 7.85654 8.01527 8.73930 8.89136 9.28439 9.46358 10.95202 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.004585 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.104786 B = 6104.762205 C = 6376.174549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.130 4.130 4 C -0.089 4.089 5 C -0.160 4.160 6 C 0.110 3.890 7 F -0.132 7.132 8 C 0.133 3.867 9 N -0.710 5.710 10 C 0.696 3.304 11 O -0.587 6.587 12 N -0.724 5.724 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.402 0.598 29 H 0.388 0.612 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 14.535 -12.719 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.179 4.179 6 C 0.089 3.911 7 F -0.110 7.110 8 C 0.039 3.961 9 N -0.366 5.366 10 C 0.396 3.604 11 O -0.464 6.464 12 N -0.376 5.376 13 C 0.145 3.855 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.238 0.762 29 H 0.220 0.780 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.599 14.803 -11.473 19.285 hybrid contribution -0.452 -1.543 -0.794 1.793 sum 4.147 13.260 -12.267 18.534 Atomic orbital electron populations 1.20748 0.90175 1.03757 1.02313 1.20087 0.96894 0.91547 0.96752 1.20976 0.94124 0.97321 1.02407 1.20968 0.94090 0.97377 0.98267 1.21033 1.00805 0.90947 1.05124 1.18100 0.89457 0.81848 1.01725 1.91507 1.79601 1.46361 1.93531 1.17089 0.88221 0.86167 1.04647 1.42483 1.62432 1.22466 1.09197 1.16141 0.79320 0.81788 0.83102 1.90904 1.58326 1.67748 1.29468 1.45706 1.63106 1.16438 1.12331 1.19031 0.96663 0.90498 0.79265 1.21252 1.41226 1.01983 0.93534 0.91834 1.24945 0.95620 0.98666 0.94785 1.69993 1.46464 1.37207 0.98594 0.86348 0.78997 0.83051 0.78418 1.19650 1.20801 1.20801 0.90875 0.90729 0.91121 0.85167 0.84985 0.84655 0.76186 0.77994 0.95628 0.95616 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.77 36.00 0.35 -0.95 16 2 C -0.05 -0.67 5.90 -104.45 -0.62 -1.28 16 3 C -0.13 -1.38 9.70 -39.60 -0.38 -1.76 16 4 C -0.09 -0.89 10.04 -39.56 -0.40 -1.29 16 5 C -0.16 -1.92 10.02 -39.55 -0.40 -2.32 16 6 C 0.11 1.70 7.31 -39.26 -0.29 1.41 16 7 F -0.13 -2.28 17.08 2.25 0.04 -2.24 16 8 C 0.13 2.07 5.27 -83.58 -0.44 1.63 16 9 N -0.71 -11.54 4.12 -14.16 -0.06 -11.60 16 10 C 0.70 14.96 8.22 -86.91 -0.71 14.24 16 11 O -0.59 -15.34 16.32 5.29 0.09 -15.26 16 12 N -0.72 -15.81 5.55 -66.41 -0.37 -16.18 16 13 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 14 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 15 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 18 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.06 7.20 -51.93 -0.37 0.69 16 24 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.40 5.11 8.84 -40.82 -0.36 4.75 16 29 H 0.39 7.16 8.34 -40.82 -0.34 6.82 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 290.57 15.07 4.38 4.38 Total: -1.00 -34.23 290.57 -7.10 -41.33 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -3.57 Total: 5.83 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -3.33 Total: 3.40 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.31 Total: -53.40 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.09 Total: -15.26 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.23 -7.10 -41.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488587488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.096 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds