Wall clock time and date at job start Sun Mar 29 2020 23:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50707 * 120.02719 * 179.97438 * 9 8 7 11 11 S 1.81402 * 109.46592 * 270.01754 * 10 9 8 12 12 C 1.81406 * 102.99872 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46995 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00480 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99572 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00236 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99811 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47209 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47283 * 119.99525 * 17 15 13 20 20 H 1.48501 * 109.47037 * 239.99343 * 17 15 13 21 21 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 22 22 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 24 24 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 25 25 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 26 26 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 27 27 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 28 28 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 29 29 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.47253 * 30.01456 * 10 9 8 31 31 H 1.08997 * 109.47106 * 150.02245 * 10 9 8 32 32 H 1.09000 * 109.47011 * 300.00095 * 12 11 10 33 33 H 1.09000 * 109.46799 * 60.00137 * 12 11 10 34 34 H 0.97001 * 119.99641 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0016 11 16 2.6014 4.4841 1.7085 12 6 1.5060 5.9155 1.5035 13 6 1.1061 6.4401 2.8584 14 1 1.4736 5.9602 3.7534 15 6 0.2700 7.5321 2.9555 16 7 -0.1780 8.1163 1.8657 17 14 -0.2253 8.1829 4.6350 18 1 0.4090 7.3561 5.6930 19 1 0.2232 9.5919 4.7720 20 1 -1.7022 8.1177 4.7753 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.7886 -0.5727 0.0009 27 1 6.2280 -0.2459 0.0051 28 1 7.1668 2.0295 0.0005 29 1 5.6692 3.9825 -0.0010 30 1 3.4542 4.8324 -0.5160 31 1 2.0411 3.7501 -0.5150 32 1 2.0286 6.6968 0.9516 33 1 0.6150 5.6151 0.9522 34 1 -0.7660 8.8848 1.9341 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582533123.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:54 Heat of formation + Delta-G solvation = -49.215348 kcal Electronic energy + Delta-G solvation = -15647.839886 eV Core-core repulsion = 13056.885375 eV Total energy + Delta-G solvation = -2590.954511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16599 -38.47094 -35.30773 -33.95146 -32.51888 -30.71845 -30.62114 -27.92557 -25.20732 -24.92731 -22.66082 -22.21937 -19.12229 -18.63175 -17.27489 -17.08055 -17.00035 -16.51657 -16.29039 -15.41468 -14.92843 -14.84273 -14.55172 -14.37019 -14.11576 -14.00150 -13.55792 -13.37368 -12.95865 -12.76174 -12.69565 -12.52253 -12.31455 -12.09720 -11.77492 -11.62584 -11.49775 -10.76566 -10.74774 -9.76564 -9.05967 -8.45196 -8.34143 -6.48178 0.15588 0.50207 1.25634 1.39186 1.39239 1.54965 2.04179 2.31903 2.36043 2.90124 2.99577 3.69371 3.80072 4.03571 4.06495 4.18214 4.27292 4.33951 4.38735 4.51064 4.58405 4.70979 4.92029 4.92333 4.92801 4.93215 5.04940 5.21424 5.39538 5.49779 5.55592 5.59890 5.87300 5.91346 6.52413 6.59161 7.19763 8.78154 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.005098 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.516187 B = 5491.163952 C = 6217.616894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.335 6.335 4 C 0.127 3.873 5 C -0.213 4.213 6 C -0.075 4.075 7 C -0.158 4.158 8 C -0.076 4.076 9 C -0.124 4.124 10 C -0.024 4.024 11 S -0.307 6.307 12 C 0.092 3.908 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.014 3.986 16 N -0.926 5.926 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.271 1.271 21 H 0.058 0.942 22 H 0.107 0.893 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.014 0.986 33 H 0.009 0.991 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.759 -17.866 -5.828 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.249 6.249 4 C 0.080 3.920 5 C -0.232 4.232 6 C -0.093 4.093 7 C -0.176 4.176 8 C -0.096 4.096 9 C -0.126 4.126 10 C -0.172 4.172 11 S -0.078 6.078 12 C -0.055 4.055 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.196 1.196 21 H 0.077 0.923 22 H 0.125 0.875 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.169 0.831 27 H 0.177 0.823 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.799 -18.017 -4.958 20.655 hybrid contribution -1.036 1.195 -0.570 1.681 sum 7.764 -16.822 -5.528 19.334 Atomic orbital electron populations 1.21814 0.92332 1.04105 1.02610 1.23051 0.96449 0.80791 1.02414 1.86154 1.19180 1.31368 1.88212 1.19026 0.82988 0.93845 0.96125 1.21496 0.94787 0.97953 1.08961 1.21378 0.94189 0.98243 0.95519 1.21360 1.00939 0.91912 1.03418 1.21110 0.90957 1.00756 0.96790 1.18783 0.94302 0.90802 1.08734 1.21914 1.01160 0.98600 0.95477 1.86551 1.65417 1.42349 1.13502 1.20730 0.93795 0.91012 0.99989 1.21011 1.30422 1.14440 0.91541 0.92144 1.25958 0.94989 0.95969 1.01776 1.70078 1.33900 1.22437 1.30098 0.85183 0.78260 0.78269 0.78035 1.18979 1.19504 1.19631 0.92296 0.87457 0.93120 0.90192 0.91130 0.83099 0.82259 0.82962 0.84828 0.89683 0.90911 0.96781 0.97283 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 10.28 71.98 0.74 -2.27 16 2 C 0.05 1.02 5.46 71.98 0.39 1.41 16 3 O -0.33 -10.70 9.18 -92.40 -0.85 -11.55 16 4 C 0.13 3.90 6.66 22.50 0.15 4.05 16 5 C -0.21 -4.86 9.04 22.36 0.20 -4.66 16 6 C -0.07 -1.43 10.04 22.25 0.22 -1.21 16 7 C -0.16 -3.37 10.04 22.28 0.22 -3.14 16 8 C -0.08 -2.11 9.70 22.25 0.22 -1.90 16 9 C -0.12 -4.15 5.15 -19.77 -0.10 -4.25 16 10 C -0.02 -0.95 5.85 71.24 0.42 -0.54 16 11 S -0.31 -14.88 21.64 -56.49 -1.22 -16.10 16 12 C 0.09 5.27 5.70 71.24 0.41 5.68 16 13 C -0.54 -32.25 9.13 25.60 0.23 -32.02 16 14 H 0.06 3.64 7.71 -2.91 -0.02 3.61 16 15 C 0.01 0.79 5.46 84.65 0.46 1.26 16 16 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 17 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 22 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 1.33 7.66 -2.39 -0.02 1.31 16 25 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 26 H 0.15 2.54 6.30 -2.91 -0.02 2.52 16 27 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.08 3.16 8.09 -2.39 -0.02 3.14 16 31 H 0.07 2.98 7.53 -2.39 -0.02 2.96 16 32 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -70.73 305.62 4.87 -65.86 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.07 Total: 8.31 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.56 Total: -37.59 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.85 Total: -11.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -14.88 SS G_CDS: -1.22 Total: -16.10 kcal Total: -70.73 4.87 -65.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582533123.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.644 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds