Wall clock time and date at job start Sun Mar 29 2020 23:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86804 * 120.00102 * 2 1 4 4 H 1.48499 * 109.46952 * 240.00187 * 3 2 1 5 5 H 1.48504 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47029 * 119.99755 * 3 2 1 7 7 C 1.40034 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99579 * 170.16360 * 7 2 1 9 9 C 1.41538 * 120.00277 * 350.15844 * 7 2 1 10 10 C 1.41175 * 120.99659 * 153.72915 * 9 7 2 11 11 C 1.37587 * 119.01344 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11298 * 0.02797 * 11 10 9 13 13 C 1.32475 * 122.22597 * 359.64870 * 12 11 10 14 14 N 1.39468 * 119.57586 * 180.34461 * 13 12 11 15 15 C 1.34775 * 120.00413 * 5.65881 * 14 13 12 16 16 O 1.21278 * 119.99960 * 5.07257 * 15 14 13 17 17 C 1.50700 * 120.00393 * 185.07838 * 15 14 13 18 18 C 1.52996 * 109.47183 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.46804 * 179.97438 * 18 17 15 20 20 F 1.39900 * 109.46969 * 180.02562 * 19 18 17 21 21 C 1.38589 * 120.84062 * 0.64188 * 13 12 11 22 22 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.49277 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.44535 * 179.97438 * 11 10 9 25 25 H 0.96998 * 120.00152 * 185.65502 * 14 13 12 26 26 H 1.09004 * 109.47099 * 299.99851 * 17 15 14 27 27 H 1.09003 * 109.47110 * 59.99625 * 17 15 14 28 28 H 1.08996 * 109.47385 * 299.99413 * 18 17 15 29 29 H 1.08999 * 109.47015 * 60.00334 * 18 17 15 30 30 H 1.08989 * 109.47525 * 300.00086 * 19 18 17 31 31 H 1.08999 * 109.46865 * 60.00483 * 19 18 17 32 32 H 1.08003 * 120.60375 * 179.67565 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0757 -1.2195 -0.1603 9 6 1.3155 -2.4296 0.2084 10 6 1.8136 -3.6467 -0.3050 11 6 1.1074 -4.8055 -0.0780 12 7 -0.0213 -4.7936 0.6078 13 6 -0.5276 -3.6798 1.1158 14 7 -1.7201 -3.7321 1.8372 15 6 -2.2900 -4.9222 2.1119 16 8 -1.7208 -5.9505 1.8128 17 6 -3.6345 -4.9752 2.7904 18 6 -4.0510 -6.4346 2.9838 19 6 -5.4158 -6.4883 3.6733 20 9 -5.7965 -7.8228 3.8507 21 6 0.1093 -2.4624 0.9341 22 1 -0.4850 0.8400 0.0004 23 1 2.7353 -3.6679 -0.8676 24 1 1.4819 -5.7405 -0.4680 25 1 -2.1393 -2.9120 2.1415 26 1 -3.5713 -4.4833 3.7611 27 1 -4.3737 -4.4656 2.1723 28 1 -4.1145 -6.9261 2.0130 29 1 -3.3119 -6.9445 3.6017 30 1 -5.3521 -5.9970 4.6441 31 1 -6.1552 -5.9783 3.0557 32 1 -0.3097 -1.5559 1.3455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597387890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:25 Heat of formation + Delta-G solvation = -66.479236 kcal Electronic energy + Delta-G solvation = -17536.350812 eV Core-core repulsion = 14410.727257 eV Total energy + Delta-G solvation = -3125.623554 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.69234 -39.64517 -37.88728 -34.47719 -33.84034 -33.73635 -30.56323 -29.01444 -26.95722 -26.01606 -22.68230 -21.96218 -21.09726 -19.62746 -17.69110 -17.04539 -16.57598 -15.86102 -15.72204 -15.20734 -15.05938 -14.73724 -14.22268 -13.91560 -13.49432 -13.40150 -12.79068 -12.62315 -12.28683 -11.94046 -11.54101 -11.40755 -11.22729 -11.11531 -10.93409 -10.73373 -10.32354 -10.18232 -9.76792 -9.43690 -9.38092 -8.01964 -7.76418 -7.07148 -6.77703 -4.66205 2.51750 2.78122 2.98626 3.01723 3.17235 3.43254 3.56503 3.82816 4.58296 4.64331 4.67730 4.69731 4.89769 5.19970 5.23669 5.46107 5.61366 5.65111 5.92037 6.00062 6.19127 6.55581 6.62195 6.77403 6.92444 7.09884 7.35601 7.43756 7.74903 7.91910 8.18695 8.39814 8.67122 8.72357 8.85927 9.65310 10.06575 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.037989 B = 0.004301 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.869055 B = 6508.540059 C = 7170.203950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.142 3.858 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.554 5.554 13 C 0.333 3.667 14 N -0.660 5.660 15 C 0.497 3.503 16 O -0.483 6.483 17 C -0.139 4.139 18 C -0.138 4.138 19 C 0.062 3.938 20 F -0.220 7.220 21 C -0.239 4.239 22 H 0.281 0.719 23 H 0.102 0.898 24 H 0.124 0.876 25 H 0.408 0.592 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 -1.379 5.777 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.273 5.273 13 C 0.109 3.891 14 N -0.306 5.306 15 C 0.281 3.719 16 O -0.353 6.353 17 C -0.179 4.179 18 C -0.176 4.176 19 C 0.007 3.993 20 F -0.201 7.201 21 C -0.264 4.264 22 H 0.092 0.908 23 H 0.121 0.879 24 H 0.141 0.859 25 H 0.243 0.757 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.436 -2.839 5.708 10.573 hybrid contribution 0.568 2.113 -0.103 2.190 sum -7.868 -0.726 5.605 9.687 Atomic orbital electron populations 1.69731 1.07576 1.29290 1.35628 1.25948 0.94886 1.01442 0.91965 0.86246 0.79982 0.79738 0.80057 1.18900 1.20246 1.18775 1.19560 0.95847 0.90026 1.43208 0.90083 1.17586 0.90378 0.92262 0.86438 1.21935 1.04155 0.94418 1.10080 1.21761 0.90588 0.96552 0.94819 1.67187 1.15002 1.28123 1.17009 1.18229 0.86662 0.90927 0.93303 1.43474 1.23509 1.09062 1.54523 1.20575 0.87102 0.84053 0.80126 1.90783 1.62937 1.32659 1.48965 1.21564 0.95822 0.98319 1.02223 1.21892 0.96118 0.96427 1.03153 1.22017 0.96989 0.78514 1.01767 1.92762 1.92663 1.37752 1.96961 1.21676 1.00969 0.95545 1.08243 0.90755 0.87938 0.85864 0.75704 0.88894 0.88777 0.89882 0.89958 0.90822 0.90790 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.27 10.70 55.55 0.59 -18.68 16 2 C 0.08 1.80 5.31 -17.34 -0.09 1.71 16 3 Si 0.92 17.73 29.57 -169.99 -5.03 12.70 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.60 9.14 -37.65 -0.34 -11.94 16 8 H 0.08 1.97 7.87 -52.48 -0.41 1.56 16 9 C 0.14 3.70 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.91 9.90 -38.70 -0.38 -7.29 16 11 C 0.12 2.82 11.15 -17.68 -0.20 2.62 16 12 N -0.55 -14.14 7.89 -12.52 -0.10 -14.24 16 13 C 0.33 8.01 7.40 -154.70 -1.15 6.87 16 14 N -0.66 -12.48 5.39 -11.49 -0.06 -12.54 16 15 C 0.50 8.88 7.78 -10.99 -0.09 8.80 16 16 O -0.48 -10.86 14.28 5.56 0.08 -10.78 16 17 C -0.14 -1.57 5.70 -27.89 -0.16 -1.73 16 18 C -0.14 -1.60 4.96 -26.73 -0.13 -1.73 16 19 C 0.06 0.56 7.55 37.16 0.28 0.84 16 20 F -0.22 -2.68 17.36 2.25 0.04 -2.64 16 21 C -0.24 -5.99 8.61 -38.48 -0.33 -6.33 16 22 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 23 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 24 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 25 H 0.41 6.19 8.70 -40.82 -0.36 5.83 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 3.29 6.11 -52.48 -0.32 2.97 16 LS Contribution 285.45 15.07 4.30 4.30 Total: -1.00 -31.59 285.45 -6.96 -38.55 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.60 Total: 8.41 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -3.19 Total: -5.07 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.43 Total: -45.47 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.59 -6.96 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597387890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.933 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds