Wall clock time and date at job start Sun Mar 29 2020 22:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 S 1.81397 * 109.47060 * 90.00060 * 7 6 5 9 9 C 1.81393 * 103.00200 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47629 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99898 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00531 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00228 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99687 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47101 * 89.99864 * 14 12 10 16 16 H 1.48504 * 109.47127 * 209.99724 * 14 12 10 17 17 H 1.48498 * 109.47072 * 329.99973 * 14 12 10 18 18 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 19 19 C 1.38166 * 120.05883 * 359.76356 * 18 6 5 20 20 C 1.50701 * 120.02891 * 180.25589 * 19 18 6 21 21 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 22 22 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 26 26 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 27 27 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 28 28 H 1.09007 * 109.47052 * 300.00358 * 9 8 7 29 29 H 1.09003 * 109.47178 * 59.99628 * 9 8 7 30 30 H 0.97003 * 120.00122 * 180.02562 * 13 12 10 31 31 H 1.08009 * 119.96868 * 180.02562 * 18 6 5 32 32 H 1.08999 * 109.46852 * 270.22884 * 20 19 18 33 33 H 1.08994 * 109.46996 * 30.23768 * 20 19 18 34 34 H 1.08996 * 109.46797 * 150.23660 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 16 4.2599 5.5577 1.7097 9 6 5.0775 7.1639 1.5053 10 6 5.3768 7.7514 2.8604 11 1 5.1021 7.2125 3.7552 12 6 6.0012 8.9768 2.9580 13 7 6.2619 9.4896 4.1406 14 14 6.4768 9.9085 1.4104 15 1 5.3554 10.7911 0.9996 16 1 7.6824 10.7328 1.6797 17 1 6.7708 8.9424 0.3217 18 6 4.0559 2.5171 0.0000 19 6 3.4311 1.2848 0.0049 20 6 4.2538 0.0222 0.0113 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2128 2.3203 -0.0005 25 1 1.3340 4.5113 -0.0019 26 1 4.9441 4.9382 -0.5139 27 1 3.3582 5.7462 -0.5148 28 1 6.0083 7.0303 0.9540 29 1 4.4220 7.8377 0.9535 30 1 6.7008 10.3519 4.2093 31 1 5.1344 2.5753 0.0008 32 1 4.4565 -0.2846 -1.0148 33 1 5.1955 0.2047 0.5289 34 1 3.7042 -0.7669 0.5245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600555808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:58 Heat of formation + Delta-G solvation = -47.479398 kcal Electronic energy + Delta-G solvation = -15394.576412 eV Core-core repulsion = 12803.697178 eV Total energy + Delta-G solvation = -2590.879234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20581 -38.63335 -35.20662 -34.21288 -32.59471 -31.44627 -28.79018 -28.15708 -26.86568 -24.61661 -22.95020 -21.71201 -19.08732 -18.90939 -17.42310 -17.28165 -16.68387 -16.17922 -15.97185 -15.35089 -15.26052 -15.04437 -14.67417 -14.43912 -14.20308 -14.13640 -13.62724 -13.20456 -12.99146 -12.83502 -12.64407 -12.54701 -12.32740 -12.03537 -11.81173 -11.71002 -11.61341 -10.89585 -10.69791 -9.77160 -8.95540 -8.50158 -8.37591 -6.47624 0.15457 0.36995 1.20051 1.33966 1.36527 1.46960 2.00729 2.29253 2.38872 2.82613 2.95178 3.73187 3.77636 3.88691 4.12464 4.33037 4.36179 4.41838 4.47788 4.60619 4.62000 4.67894 4.74352 4.76258 4.76761 4.85347 4.97786 5.27617 5.33656 5.34518 5.44215 5.63875 5.81047 6.06913 6.44472 6.56391 7.14844 8.78424 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.045983 B = 0.003956 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.773961 B = 7075.907997 C = 7184.792920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.117 3.883 4 C -0.204 4.204 5 C -0.077 4.077 6 C -0.110 4.110 7 C -0.035 4.035 8 S -0.304 6.304 9 C 0.048 3.952 10 C -0.531 4.531 11 H 0.033 0.967 12 C 0.018 3.982 13 N -0.941 5.941 14 Si 0.956 3.044 15 H -0.261 1.261 16 H -0.277 1.277 17 H -0.245 1.245 18 C -0.074 4.074 19 C -0.131 4.131 20 C -0.100 4.100 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.120 0.880 24 H 0.152 0.848 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.273 0.727 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 -17.685 -14.523 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.071 3.929 4 C -0.223 4.223 5 C -0.097 4.097 6 C -0.112 4.112 7 C -0.182 4.182 8 S -0.075 6.075 9 C -0.100 4.100 10 C -0.569 4.569 11 H 0.051 0.949 12 C -0.182 4.182 13 N -0.580 5.580 14 Si 0.778 3.222 15 H -0.185 1.185 16 H -0.202 1.202 17 H -0.168 1.168 18 C -0.094 4.094 19 C -0.131 4.131 20 C -0.157 4.157 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.169 0.831 25 H 0.153 0.847 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.126 -18.216 -13.475 24.818 hybrid contribution 0.386 1.605 -0.914 1.887 sum -9.740 -16.611 -14.388 24.037 Atomic orbital electron populations 1.23343 0.76654 1.05558 1.02139 1.86029 1.23192 1.26307 1.88557 1.19003 0.92026 0.84821 0.97083 1.21399 1.01110 0.91482 1.08267 1.21009 0.93539 0.98187 0.96919 1.19225 0.94083 0.93046 1.04842 1.22215 1.03744 0.97206 0.95068 1.87099 1.79652 1.27040 1.13707 1.21209 0.97625 0.91984 0.99153 1.20694 1.40344 1.04647 0.91216 0.94868 1.25935 0.94384 0.97648 1.00223 1.70026 1.42765 1.19381 1.25874 0.85583 0.78660 0.78932 0.79057 1.18542 1.20211 1.16822 1.20929 1.00380 0.90500 0.97602 1.19489 0.91265 0.96557 1.05819 1.20601 0.98777 0.93390 1.02883 0.92190 0.91625 0.86146 0.83073 0.84716 0.88832 0.88695 0.93971 0.94072 0.91822 0.84611 0.90411 0.90997 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.78 9.54 -92.39 -0.88 -7.66 16 3 C 0.12 2.80 6.66 22.51 0.15 2.95 16 4 C -0.20 -4.61 9.04 22.37 0.20 -4.41 16 5 C -0.08 -1.97 9.69 22.25 0.22 -1.75 16 6 C -0.11 -3.15 5.14 -19.85 -0.10 -3.25 16 7 C -0.04 -1.09 6.07 71.24 0.43 -0.66 16 8 S -0.30 -13.10 21.64 -56.49 -1.22 -14.32 16 9 C 0.05 2.33 4.77 71.23 0.34 2.67 16 10 C -0.53 -31.56 9.68 25.60 0.25 -31.32 16 11 H 0.03 2.24 7.96 -2.91 -0.02 2.22 16 12 C 0.02 1.04 5.47 84.66 0.46 1.50 16 13 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 14 Si 0.96 42.98 27.47 68.60 1.88 44.86 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 18 C -0.07 -1.99 9.35 22.25 0.21 -1.78 16 19 C -0.13 -3.24 5.89 -19.77 -0.12 -3.36 16 20 C -0.10 -1.98 9.79 71.24 0.70 -1.28 16 21 H 0.06 0.69 7.66 -2.39 -0.02 0.68 16 22 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 23 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 25 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 26 H 0.09 2.67 8.08 -2.39 -0.02 2.65 16 27 H 0.09 2.67 8.08 -2.39 -0.02 2.65 16 28 H 0.04 1.95 7.20 -2.39 -0.02 1.94 16 29 H 0.04 1.88 7.57 -2.39 -0.02 1.86 16 30 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 34 H 0.07 1.34 7.53 -2.39 -0.02 1.33 16 Total: -1.00 -70.00 301.57 4.95 -65.05 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.02 Total: 10.07 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 3.85 Total: -39.36 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.30 Total: -58.66 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.88 Total: -7.66 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 16 Polarization: -13.10 SS G_CDS: -1.22 Total: -14.32 kcal Total: -70.00 4.95 -65.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600555808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.575 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds