Wall clock time and date at job start Sun Mar 29 2020 23:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48497 * 109.47217 * 270.00065 * 3 2 1 5 5 H 1.48501 * 109.46471 * 30.00447 * 3 2 1 6 6 H 1.48504 * 109.46763 * 150.00159 * 3 2 1 7 7 C 1.37885 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.57574 * 60.30132 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.60215 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.50700 * 109.47354 * 169.99549 * 13 12 11 15 15 C 1.35141 * 127.24606 * 89.99571 * 14 13 12 16 16 C 1.37806 * 114.76276 * 180.02562 * 15 14 13 17 17 N 1.30086 * 116.87955 * 0.02562 * 16 15 14 18 18 S 1.69605 * 107.14980 * 359.73048 * 17 16 15 19 19 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 20 20 C 1.53042 * 109.52278 * 298.25596 * 19 12 11 21 21 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.52421 * 300.13228 * 9 7 2 23 23 H 1.08997 * 109.51083 * 57.64808 * 10 9 7 24 24 H 1.08998 * 109.48980 * 297.53740 * 10 9 7 25 25 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 26 26 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 27 27 H 1.09000 * 109.47118 * 289.99436 * 13 12 11 28 28 H 1.09003 * 109.47534 * 49.99526 * 13 12 11 29 29 H 1.07998 * 122.62023 * 359.97438 * 15 14 13 30 30 H 1.08002 * 121.56429 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.46313 * 58.27251 * 19 12 11 32 32 H 1.09000 * 109.46480 * 178.25361 * 19 12 11 33 33 H 1.08997 * 109.50758 * 179.11703 * 20 19 12 34 34 H 1.08998 * 109.50897 * 299.20258 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3749 -2.5858 -1.2534 11 6 -0.3411 -3.9381 -1.2769 12 7 0.6526 -5.0193 -1.2772 13 6 0.0062 -6.3284 -1.4391 14 6 1.0570 -7.3811 -1.6807 15 6 1.7026 -8.1207 -0.7520 16 6 2.6204 -9.0137 -1.2611 17 7 2.7585 -9.0420 -2.5543 18 16 1.6833 -7.8987 -3.1973 19 6 1.4748 -4.9852 -0.0610 20 6 2.2449 -3.6640 -0.0011 21 1 -0.4849 0.8401 0.0004 22 1 0.6225 -2.5570 0.8882 23 1 0.9992 -2.4890 -2.1416 24 1 -0.3629 -1.7836 -1.2375 25 1 -0.9548 -4.0086 -2.1750 26 1 -0.9757 -4.0284 -0.3954 27 1 -0.5515 -6.5725 -0.5350 28 1 -0.6760 -6.2942 -2.2887 29 1 1.5145 -8.0192 0.3067 30 1 3.1980 -9.6599 -0.6167 31 1 0.8316 -5.0707 0.8147 32 1 2.1802 -5.8161 -0.0761 33 1 2.8430 -3.6323 0.9095 34 1 2.8991 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602595456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:07 Heat of formation + Delta-G solvation = 34.332281 kcal Electronic energy + Delta-G solvation = -16356.891357 eV Core-core repulsion = 13801.852494 eV Total energy + Delta-G solvation = -2555.038863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10005 -37.96254 -34.35018 -32.15346 -30.69466 -29.63493 -27.22122 -25.09270 -23.39872 -22.08133 -21.37115 -19.85980 -18.59660 -17.59481 -16.42390 -15.69509 -15.42639 -14.61239 -14.38768 -13.96587 -13.79454 -13.14253 -13.10564 -12.66564 -12.39646 -12.29478 -11.81873 -11.41741 -11.05185 -10.95104 -10.80901 -10.47519 -10.42853 -10.24764 -10.02693 -9.54201 -9.40990 -8.99615 -8.74293 -8.67366 -8.30597 -7.89337 -5.98382 -4.03366 0.72653 1.55305 1.94081 2.47929 3.31393 3.38075 3.41475 4.32724 4.45089 4.64099 4.98630 5.20171 5.31804 5.34824 5.53330 5.68812 5.77165 5.82831 5.91989 6.03768 6.13916 6.27575 6.52623 6.58391 6.59619 6.82739 7.03583 7.10509 7.36641 7.54269 7.57962 7.79460 8.02687 8.13121 8.47338 9.00147 9.61197 11.07948 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.004743 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.255228 B = 5901.851355 C = 6060.946670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.530 5.530 13 C 0.121 3.879 14 C -0.140 4.140 15 C -0.215 4.215 16 C 0.090 3.910 17 N -0.474 5.474 18 S 0.269 5.731 19 C 0.056 3.944 20 C -0.105 4.105 21 H 0.259 0.741 22 H 0.021 0.979 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.180 0.820 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.540 -14.792 -2.099 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.255 5.255 13 C -0.008 4.008 14 C -0.271 4.271 15 C -0.250 4.250 16 C -0.107 4.107 17 N -0.295 5.295 18 S 0.420 5.580 19 C -0.071 4.071 20 C -0.143 4.143 21 H 0.069 0.931 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.170 0.830 30 H 0.196 0.804 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.094 -14.893 -4.630 15.596 hybrid contribution -0.308 0.904 2.688 2.853 sum -0.214 -13.988 -1.942 14.124 Atomic orbital electron populations 1.69865 1.05870 1.26323 1.51146 1.24961 0.94836 0.99002 0.95164 0.86633 0.79888 0.83618 0.78089 1.20706 1.21326 1.19998 1.21205 0.92895 0.90643 1.50084 0.92769 1.18690 0.92694 0.91783 0.93920 1.21680 1.00286 0.92736 0.99551 1.22315 0.92875 0.92724 0.98940 1.62042 1.23698 1.00640 1.39158 1.20488 0.91543 0.87247 1.01557 1.25465 1.02139 1.00598 0.98858 1.21330 1.00994 1.00165 1.02522 1.22750 0.97648 0.98586 0.91713 1.76740 1.20748 1.19331 1.12639 1.84049 1.31352 1.30635 1.11952 1.22221 0.95983 0.99695 0.89243 1.21674 0.98718 0.93608 1.00336 0.93097 0.96122 0.93684 0.88740 0.92353 0.95590 0.92938 0.89459 0.82965 0.80362 0.95652 0.92073 0.93156 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 11.37 55.43 0.63 -24.47 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.90 8.56 -34.44 -0.29 -14.19 16 8 H 0.05 1.47 7.75 -52.48 -0.41 1.07 16 9 C 0.05 1.16 2.16 -91.65 -0.20 0.97 16 10 C -0.10 -2.39 5.12 -26.65 -0.14 -2.53 16 11 C 0.06 1.08 5.46 -3.84 -0.02 1.06 16 12 N -0.53 -8.98 4.65 -236.12 -1.10 -10.07 16 13 C 0.12 1.63 5.54 -4.98 -0.03 1.60 16 14 C -0.14 -1.80 5.46 -35.41 -0.19 -2.00 16 15 C -0.21 -2.48 8.71 -40.84 -0.36 -2.84 16 16 C 0.09 1.02 11.27 -18.45 -0.21 0.81 16 17 N -0.47 -6.41 12.09 28.86 0.35 -6.06 16 18 S 0.27 3.50 23.72 -107.50 -2.55 0.95 16 19 C 0.06 0.98 5.28 -3.83 -0.02 0.96 16 20 C -0.11 -2.20 5.32 -26.64 -0.14 -2.34 16 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 25 H 0.06 0.97 8.02 -51.93 -0.42 0.56 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.09 1.06 7.99 -51.93 -0.41 0.65 16 29 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.97 6.02 -51.93 -0.31 0.66 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 288.22 15.07 4.34 4.34 Total: -1.00 -28.74 288.22 -9.85 -38.59 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.81 Total: -2.53 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.69 Total: -16.92 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.12 Total: -40.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.55 Total: 0.95 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.74 -9.85 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602595456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.921 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds