Wall clock time and date at job start Sun Mar 29 2020 23:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38845 * 119.98043 * 2 1 4 4 C 1.38541 * 118.04462 * 179.97438 * 3 2 1 5 5 C 1.39547 * 117.89860 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.15997 * 179.97438 * 5 4 3 7 7 C 1.81400 * 102.99858 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47329 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46881 * 300.00000 * 8 7 6 10 10 C 1.52994 * 109.47167 * 59.99827 * 8 7 6 11 11 C 1.50692 * 109.47187 * 180.02562 * 8 7 6 12 12 H 1.07998 * 120.00178 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99894 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99821 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00111 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47468 * 59.99951 * 15 13 11 17 17 H 1.48500 * 109.47504 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47117 * 300.00412 * 15 13 11 19 19 N 1.32553 * 119.67361 * 359.97438 * 5 4 3 20 20 N 1.28347 * 122.06416 * 0.02562 * 19 5 4 21 21 H 1.09002 * 109.47357 * 90.00618 * 1 2 3 22 22 H 1.09007 * 109.46932 * 210.00173 * 1 2 3 23 23 H 1.09004 * 109.47313 * 329.99827 * 1 2 3 24 24 H 1.08003 * 120.98338 * 359.70192 * 3 2 1 25 25 H 1.07993 * 121.04836 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47518 * 299.99783 * 7 6 5 27 27 H 1.09004 * 109.47314 * 60.00219 * 7 6 5 28 28 H 1.09002 * 109.47259 * 59.99915 * 9 8 7 29 29 H 1.08999 * 109.46985 * 179.97438 * 9 8 7 30 30 H 1.09005 * 109.47108 * 300.00118 * 9 8 7 31 31 H 1.08998 * 109.47343 * 60.00054 * 10 8 7 32 32 H 1.08999 * 109.47459 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47103 * 300.00164 * 10 8 7 34 34 H 0.97001 * 119.99383 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.2027 0.0000 4 6 3.5854 1.1559 0.0005 5 6 4.1963 -0.0988 0.0016 6 16 5.9536 -0.2277 0.0017 7 6 6.2311 -2.0204 0.0024 8 6 7.7347 -2.3037 0.0032 9 6 8.3700 -1.6898 -1.2460 10 6 8.3689 -1.6889 1.2524 11 6 7.9653 -3.7929 0.0032 12 1 7.1236 -4.4696 0.0023 13 6 9.2508 -4.2915 0.0033 14 7 10.2757 -3.4673 0.0039 15 14 9.5366 -6.1375 0.0026 16 1 8.9209 -6.7333 -1.2103 17 1 10.9959 -6.4125 0.0034 18 1 8.9202 -6.7343 1.2146 19 7 3.4481 -1.1930 0.0026 20 7 2.1657 -1.1415 0.0021 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6766 2.1469 -0.0048 25 1 4.1733 2.0617 0.0002 26 1 5.7790 -2.4577 0.8926 27 1 5.7790 -2.4585 -0.8874 28 1 8.2032 -0.6126 -1.2465 29 1 9.4412 -1.8912 -1.2453 30 1 7.9181 -2.1278 -2.1361 31 1 7.9164 -2.1262 2.1424 32 1 9.4401 -1.8904 1.2528 33 1 8.2021 -0.6117 1.2520 34 1 11.1800 -3.8182 0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603315975.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:50 Heat of formation + Delta-G solvation = 37.653416 kcal Electronic energy + Delta-G solvation = -15936.968702 eV Core-core repulsion = 13382.073854 eV Total energy + Delta-G solvation = -2554.894847 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74340 -35.99574 -33.88680 -32.99680 -31.52797 -28.43095 -26.17548 -25.68337 -25.13354 -24.60169 -22.97620 -19.07900 -17.85958 -17.24168 -15.96599 -15.65637 -15.19956 -14.73099 -14.42745 -13.62645 -13.42710 -13.24583 -12.96967 -12.68390 -12.47248 -12.27337 -11.44044 -11.29814 -11.05570 -10.85867 -10.64091 -10.36269 -10.30554 -10.14926 -10.03972 -10.00214 -9.54881 -9.51738 -9.42872 -8.66368 -8.37252 -7.21191 -5.99613 -4.10307 0.86225 0.90182 1.81544 2.89706 3.31971 3.36135 3.40301 3.54280 4.24673 4.41933 4.53154 4.64768 4.80455 5.01479 5.26717 5.30592 5.37295 5.61886 5.71529 6.02383 6.05154 6.15312 6.19525 6.55721 6.82193 6.91881 7.04479 7.05370 7.35828 7.58877 7.72262 8.02845 8.15235 8.39583 8.79169 8.88823 9.54941 11.01586 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039287 B = 0.004981 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.537181 B = 5620.021696 C = 6136.201464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.042 3.958 3 C -0.106 4.106 4 C -0.105 4.105 5 C 0.051 3.949 6 S -0.053 6.053 7 C -0.066 4.066 8 C 0.079 3.921 9 C -0.135 4.135 10 C -0.135 4.135 11 C -0.504 4.504 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.247 5.247 20 N -0.233 5.233 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.016 0.984 29 H 0.087 0.913 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.016 0.984 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 10.520 -0.020 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.203 4.203 6 S 0.188 5.812 7 C -0.214 4.214 8 C 0.077 3.923 9 C -0.193 4.193 10 C -0.193 4.193 11 C -0.544 4.544 12 H 0.076 0.924 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.094 5.094 20 N -0.076 5.076 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.166 0.834 25 H 0.169 0.831 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.035 0.965 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.162 9.667 -0.017 15.536 hybrid contribution -0.749 -0.372 -0.013 0.836 sum -12.911 9.295 -0.030 15.909 Atomic orbital electron populations 1.20595 0.87823 1.03639 1.03207 1.22740 0.98811 0.90581 0.98646 1.22124 0.94244 0.99638 0.97641 1.22000 0.95032 0.98024 0.98860 1.25415 1.03477 0.93564 0.97890 1.85724 0.90617 1.16599 1.88247 1.24136 1.04408 0.87890 1.05007 1.18066 0.84721 0.96087 0.93429 1.21906 1.04624 0.95456 0.97272 1.21901 1.04617 0.95461 0.97271 1.20967 0.92271 0.90000 1.51188 0.92450 1.24877 0.95975 0.97796 0.94773 1.69805 0.98422 1.33782 1.50343 0.86616 0.76946 0.85503 0.78695 1.20260 1.21282 1.20263 1.73667 0.99015 1.24873 1.11810 1.72738 1.01905 1.24981 1.07988 0.90296 0.90227 0.90639 0.83367 0.83132 0.90163 0.90166 0.96473 0.89458 0.95337 0.95335 0.89463 0.96466 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.19 36.00 0.37 -0.42 16 2 C 0.04 0.54 6.87 -82.39 -0.57 -0.03 16 3 C -0.11 -1.17 9.86 -39.25 -0.39 -1.56 16 4 C -0.10 -1.37 9.97 -38.98 -0.39 -1.76 16 5 C 0.05 0.87 7.08 -16.75 -0.12 0.75 16 6 S -0.05 -0.98 18.98 -107.50 -2.04 -3.02 16 7 C -0.07 -1.44 4.17 37.16 0.15 -1.28 16 8 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 9 C -0.13 -3.19 8.01 37.16 0.30 -2.89 16 10 C -0.13 -3.19 8.01 37.15 0.30 -2.89 16 11 C -0.50 -13.45 8.01 -34.44 -0.28 -13.73 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 14 N -0.89 -23.99 9.35 55.43 0.52 -23.47 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 N -0.25 -4.70 10.61 31.49 0.33 -4.37 16 20 N -0.23 -3.99 11.41 33.62 0.38 -3.60 16 21 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 23 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 24 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 25 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.08 1.78 8.14 -51.92 -0.42 1.36 16 27 H 0.08 1.78 8.14 -51.92 -0.42 1.36 16 28 H 0.02 0.36 6.92 -51.93 -0.36 0.00 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 33 H 0.02 0.36 6.92 -51.93 -0.36 0.00 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -29.09 294.14 -6.88 -35.97 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.69 Total: -1.62 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.79 Total: -20.27 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 1.24 Total: -31.44 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.04 Total: -3.02 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.09 -6.88 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603315975.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.622 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds