Wall clock time and date at job start Sun Mar 29 2020 23:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48509 * 109.46989 * 269.99701 * 3 2 1 5 5 H 1.48497 * 109.47250 * 29.99609 * 3 2 1 6 6 H 1.48501 * 109.47363 * 150.00172 * 3 2 1 7 7 C 1.37881 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00352 * 0.02562 * 7 2 1 10 10 O 1.42893 * 110.28447 * 60.67363 * 9 7 2 11 11 C 1.54257 * 110.32069 * 298.54543 * 9 7 2 12 12 C 1.54381 * 105.14978 * 240.94890 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.39326 * 111.01536 * 158.96402 * 13 12 11 15 15 C 1.39399 * 120.87264 * 304.21004 * 14 13 12 16 16 C 1.37941 * 119.09663 * 179.75606 * 15 14 13 17 17 N 1.31972 * 120.88372 * 0.53209 * 16 15 14 18 18 C 1.32018 * 121.91714 * 359.73927 * 17 16 15 19 19 C 1.38085 * 120.81026 * 359.97438 * 18 17 16 20 20 F 1.35096 * 120.48596 * 179.97438 * 19 18 17 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.96999 * 119.99733 * 0.02562 * 1 2 3 23 23 H 0.96693 * 114.00324 * 299.32262 * 10 9 7 24 24 H 1.09002 * 110.32715 * 359.89945 * 11 9 7 25 25 H 1.08998 * 110.32251 * 122.00472 * 11 9 7 26 26 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 27 27 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 28 28 H 1.07998 * 120.45016 * 359.97438 * 15 14 13 29 29 H 1.07994 * 119.55960 * 180.27578 * 16 15 14 30 30 H 1.08001 * 119.59297 * 179.97438 * 18 17 16 31 31 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 32 32 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4351 -2.6003 -1.1683 11 6 0.3839 -2.6172 1.2709 12 6 0.9126 -3.8679 2.0055 13 7 1.5514 -4.6843 0.9392 14 6 2.4666 -5.5849 1.4801 15 6 3.5139 -5.1427 2.2869 16 6 4.3959 -6.0668 2.8074 17 7 4.2644 -7.3529 2.5422 18 6 3.2903 -7.8121 1.7786 19 6 2.3621 -6.9535 1.2236 20 9 1.3682 -7.4304 0.4428 21 6 2.2331 -3.6880 0.0733 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2317 -1.9042 -1.2439 24 1 0.5047 -1.7320 1.8954 25 1 -0.6642 -2.7505 1.0030 26 1 1.6481 -3.5840 2.7584 27 1 0.0896 -4.4156 2.4644 28 1 3.6309 -4.0914 2.5043 29 1 5.2073 -5.7329 3.4370 30 1 3.2184 -8.8723 1.5858 31 1 2.4037 -4.1016 -0.9206 32 1 3.1757 -3.3754 0.5228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603394532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:00 Heat of formation + Delta-G solvation = -46.228779 kcal Electronic energy + Delta-G solvation = -18701.869413 eV Core-core repulsion = 15577.123985 eV Total energy + Delta-G solvation = -3124.745428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.64062 -40.31707 -38.29639 -35.20148 -32.21204 -31.72184 -30.86413 -28.52528 -28.10616 -24.94900 -23.67541 -22.70729 -20.67744 -19.58741 -17.70564 -17.28804 -16.97471 -16.57839 -15.57566 -15.15532 -14.95346 -14.37992 -14.09384 -13.84341 -13.40147 -13.37358 -13.08227 -12.62334 -12.40956 -11.84940 -11.72156 -11.38733 -11.18314 -10.74042 -10.68757 -10.49829 -10.06183 -9.67031 -9.47339 -9.19408 -8.84249 -8.67991 -8.33221 -8.13229 -6.29819 -4.39632 0.98110 1.06254 3.16741 3.24501 3.26357 3.63082 3.96312 4.21055 4.29515 4.48771 4.84457 4.89544 4.97927 5.31889 5.45624 5.67932 5.69958 5.77378 5.86458 5.97838 6.06144 6.24123 6.40790 6.59840 6.71491 6.87152 7.09011 7.31698 7.42061 7.55779 7.70299 7.80783 8.06755 8.63174 9.29756 9.47117 10.76901 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.034601 B = 0.006250 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.041056 B = 4478.588831 C = 4922.497297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.255 3.745 10 O -0.584 6.584 11 C -0.120 4.120 12 C 0.037 3.963 13 N -0.482 5.482 14 C 0.109 3.891 15 C -0.178 4.178 16 C 0.093 3.907 17 N -0.470 5.470 18 C 0.071 3.929 19 C 0.066 3.934 20 F -0.119 7.119 21 C 0.057 3.943 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.077 0.923 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -8.524 5.344 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.215 3.785 10 O -0.393 6.393 11 C -0.159 4.159 12 C -0.089 4.089 13 N -0.203 5.203 14 C 0.004 3.996 15 C -0.200 4.200 16 C -0.064 4.064 17 N -0.179 5.179 18 C -0.088 4.088 19 C 0.043 3.957 20 F -0.098 7.098 21 C -0.068 4.068 22 H 0.078 0.922 23 H 0.231 0.769 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.178 0.822 30 H 0.183 0.817 31 H 0.096 0.904 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.876 -9.832 5.261 12.171 hybrid contribution -0.142 2.434 0.102 2.440 sum 4.734 -7.399 5.363 10.291 Atomic orbital electron populations 1.69700 1.05927 1.27634 1.49890 1.25000 0.95004 0.99470 0.93684 0.86460 0.79757 0.82613 0.78393 1.20364 1.21017 1.19827 1.21655 0.93508 0.90603 1.52136 0.92085 1.19192 0.86581 0.90218 0.82502 1.86144 1.51985 1.55573 1.45606 1.22900 0.99764 0.94158 0.99056 1.23357 0.97889 0.94973 0.92634 1.63108 1.24963 1.15518 1.16742 1.19743 0.92780 0.92690 0.94377 1.22812 0.95631 1.02596 0.98953 1.22645 0.98164 0.87977 0.97657 1.67730 1.20196 1.16735 1.13211 1.22786 0.90532 1.00373 0.95071 1.18792 0.89497 0.91737 0.95666 1.91521 1.58594 1.88039 1.71636 1.23281 0.96098 0.91169 0.96264 0.92159 0.76916 0.90460 0.92219 0.93808 0.91178 0.83642 0.82215 0.81695 0.90441 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 10.81 55.43 0.60 -22.48 16 2 C 0.07 1.82 5.02 -17.82 -0.09 1.73 16 3 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.90 8.08 -34.44 -0.28 -14.18 16 8 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 9 C 0.26 6.19 1.05 -90.39 -0.10 6.09 16 10 O -0.58 -15.26 12.94 -35.23 -0.46 -15.71 16 11 C -0.12 -2.68 5.54 -25.35 -0.14 -2.82 16 12 C 0.04 0.71 6.37 -2.09 -0.01 0.69 16 13 N -0.48 -9.47 5.28 -166.30 -0.88 -10.35 16 14 C 0.11 1.84 4.93 -83.50 -0.41 1.43 16 15 C -0.18 -2.57 8.14 -39.26 -0.32 -2.89 16 16 C 0.09 1.17 11.17 -17.60 -0.20 0.98 16 17 N -0.47 -6.43 10.36 -13.30 -0.14 -6.57 16 18 C 0.07 0.95 11.16 -17.53 -0.20 0.75 16 19 C 0.07 1.04 7.36 -39.12 -0.29 0.75 16 20 F -0.12 -2.03 17.15 2.25 0.04 -1.99 16 21 C 0.06 1.22 5.64 -2.18 -0.01 1.21 16 22 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 23 H 0.38 9.97 7.32 45.56 0.33 10.30 16 24 H 0.08 1.82 7.24 -51.93 -0.38 1.45 16 25 H 0.06 1.38 7.98 -51.93 -0.41 0.97 16 26 H 0.04 0.76 6.58 -51.93 -0.34 0.42 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.15 2.01 6.89 -52.49 -0.36 1.65 16 29 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.08 1.72 8.08 -51.93 -0.42 1.30 16 32 H 0.05 1.11 6.40 -51.93 -0.33 0.77 16 LS Contribution 272.51 15.07 4.11 4.11 Total: -1.00 -27.58 272.51 -6.50 -34.08 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -2.71 Total: 10.26 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.04 Total: -6.26 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.42 Total: -39.40 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.46 Total: -15.71 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.58 -6.50 -34.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603394532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.146 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds