Wall clock time and date at job start Sun Mar 29 2020 23:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38303 * 119.91715 * 269.71772 * 4 3 2 6 6 C 1.38089 * 120.07600 * 179.76654 * 5 4 3 7 7 C 1.38970 * 119.92121 * 0.51620 * 6 5 4 8 8 S 1.76198 * 120.08212 * 179.72303 * 7 6 5 9 9 C 1.81403 * 102.99789 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46674 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00256 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99886 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99680 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00048 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46963 * 60.00167 * 15 13 11 17 17 H 1.48503 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47195 * 300.00105 * 15 13 11 19 19 C 1.38979 * 119.83795 * 359.74061 * 7 6 5 20 20 C 1.38083 * 119.91910 * 0.02562 * 19 7 6 21 21 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 22 22 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 25 25 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 26 26 H 1.07998 * 119.96177 * 0.02562 * 5 4 3 27 27 H 1.08006 * 120.03800 * 180.25619 * 6 5 4 28 28 H 1.08992 * 109.47472 * 299.99899 * 9 8 7 29 29 H 1.08998 * 109.46747 * 60.00197 * 9 8 7 30 30 H 1.09001 * 109.46781 * 299.99778 * 10 9 8 31 31 H 1.08993 * 109.47033 * 60.00482 * 10 9 8 32 32 H 0.97003 * 119.99232 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.03521 * 179.97438 * 19 7 6 34 34 H 1.08003 * 119.95451 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2001 1.1381 1.1996 6 6 5.5763 1.0242 1.2041 7 6 6.2712 0.9690 0.0019 8 16 8.0277 0.8310 0.0026 9 6 8.4338 0.7992 1.7703 10 6 9.9494 0.6808 1.9433 11 6 10.2867 0.6538 3.4119 12 1 9.4989 0.7154 4.1481 13 6 11.6010 0.5505 3.8156 14 7 12.5602 0.4750 2.9190 15 14 12.0191 0.5177 5.6359 16 1 11.3548 -0.6463 6.2755 17 1 13.4900 0.4015 5.8039 18 1 11.5449 1.7713 6.2753 19 6 5.5772 1.0232 -1.2011 20 6 4.2007 1.1322 -1.1977 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 3.6598 1.1852 2.1336 27 1 6.1123 0.9823 2.1408 28 1 8.0857 1.7193 2.2397 29 1 7.9462 -0.0552 2.2397 30 1 10.2979 -0.2391 1.4739 31 1 10.4365 1.5355 1.4740 32 1 13.4848 0.4020 3.2031 33 1 6.1141 0.9810 -2.1372 34 1 3.6609 1.1749 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610480515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:31 Heat of formation + Delta-G solvation = -38.092297 kcal Electronic energy + Delta-G solvation = -15113.653561 eV Core-core repulsion = 12523.181382 eV Total energy + Delta-G solvation = -2590.472179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31897 -37.62882 -33.79609 -32.11521 -31.26464 -30.60801 -27.49913 -25.63361 -25.26435 -22.73882 -21.56940 -20.99510 -17.39442 -16.62791 -16.58589 -16.14067 -16.08618 -14.81142 -14.59381 -14.36494 -14.28666 -13.94631 -13.38916 -12.99171 -12.78587 -12.52501 -12.14869 -11.79029 -11.62553 -11.20307 -11.06091 -10.96668 -10.65195 -10.34175 -9.93947 -9.79007 -9.68475 -9.43526 -9.17143 -8.89247 -8.46142 -7.00838 -6.10286 -4.15330 1.20539 1.47110 2.03137 3.03120 3.28557 3.33296 3.35593 3.45208 4.04202 4.38647 4.73874 4.75984 5.01706 5.03553 5.06738 5.16146 5.19492 5.25500 5.38661 5.46064 5.67442 5.82552 5.86679 6.04433 6.07832 6.33825 6.43192 6.57223 6.63269 6.89264 6.97185 7.48135 7.55621 7.84609 8.21307 8.88929 9.48963 11.00552 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.038669 B = 0.003641 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.916310 B = 7688.556791 C = 8288.230148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.115 4.115 5 C -0.077 4.077 6 C -0.139 4.139 7 C -0.064 4.064 8 S -0.138 6.138 9 C -0.081 4.081 10 C 0.037 3.963 11 C -0.523 4.523 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.112 4.112 20 C -0.081 4.081 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.127 0.873 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 1.984 -6.487 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.118 4.118 5 C -0.097 4.097 6 C -0.163 4.163 7 C -0.177 4.177 8 S 0.110 5.890 9 C -0.229 4.229 10 C -0.001 4.001 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.136 4.136 20 C -0.101 4.101 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.564 1.733 -7.412 20.993 hybrid contribution -0.803 0.264 2.037 2.205 sum -20.367 1.997 -5.375 21.159 Atomic orbital electron populations 1.22750 0.81269 1.02774 0.99863 1.88011 1.19348 1.27716 1.95360 1.21300 0.90085 0.84865 1.00606 1.19449 0.93615 1.05125 0.93650 1.20897 0.93694 0.97793 0.97336 1.21299 0.94590 1.03071 0.97353 1.22103 0.98474 1.01018 0.96135 1.85683 0.97214 1.89891 1.16207 1.24038 1.05424 1.03967 0.89495 1.18921 0.84923 0.98598 0.97693 1.21024 0.92446 1.51814 0.91040 0.92384 1.25010 0.96318 0.94922 0.97943 1.69958 1.00102 1.49402 1.33408 0.86558 0.77310 0.78711 0.84860 1.20093 1.21127 1.20102 1.20751 0.93737 1.02486 0.96635 1.20875 0.93616 0.98363 0.97279 0.94104 0.94143 0.89630 0.92604 0.92597 0.85980 0.85236 0.90528 0.90506 0.95371 0.95383 0.92635 0.85490 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.41 10.69 -35.23 -0.38 -4.78 16 3 C 0.11 1.09 6.06 36.01 0.22 1.31 16 4 C -0.12 -1.45 5.51 -104.58 -0.58 -2.03 16 5 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 6 C -0.14 -2.15 9.36 -39.36 -0.37 -2.52 16 7 C -0.06 -1.05 6.11 -39.04 -0.24 -1.29 16 8 S -0.14 -2.59 21.92 -107.50 -2.36 -4.95 16 9 C -0.08 -1.69 4.27 37.16 0.16 -1.53 16 10 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 11 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 15 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.11 -1.60 9.79 -39.36 -0.39 -1.99 16 20 C -0.08 -1.02 9.69 -39.62 -0.38 -1.41 16 21 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.13 2.00 5.88 -52.48 -0.31 1.69 16 28 H 0.08 1.52 7.75 -51.93 -0.40 1.12 16 29 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -30.36 306.29 -8.68 -39.03 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.88 Total: -2.59 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -1.40 Total: -21.89 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.38 Total: -4.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.36 Total: -4.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.36 -8.68 -39.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610480515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.943 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds