Wall clock time and date at job start Sun Mar 29 2020 23:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38303 * 119.91715 * 269.71772 * 4 3 2 6 6 C 1.38089 * 120.07600 * 179.76654 * 5 4 3 7 7 C 1.38970 * 119.92121 * 0.51620 * 6 5 4 8 8 S 1.76198 * 120.08212 * 179.72303 * 7 6 5 9 9 C 1.81403 * 102.99789 * 0.02562 * 8 7 6 10 10 C 1.53006 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46674 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00256 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99886 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99680 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00048 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46963 * 60.00167 * 15 13 11 17 17 H 1.48503 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47195 * 300.00105 * 15 13 11 19 19 C 1.38979 * 119.83795 * 359.74061 * 7 6 5 20 20 C 1.38083 * 119.91910 * 0.02562 * 19 7 6 21 21 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 22 22 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 25 25 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 26 26 H 1.07998 * 119.96177 * 0.02562 * 5 4 3 27 27 H 1.08006 * 120.03800 * 180.25619 * 6 5 4 28 28 H 1.08992 * 109.47472 * 299.99899 * 9 8 7 29 29 H 1.08998 * 109.46747 * 60.00197 * 9 8 7 30 30 H 1.09001 * 109.46781 * 299.99778 * 10 9 8 31 31 H 1.08993 * 109.47033 * 60.00482 * 10 9 8 32 32 H 0.97003 * 119.99232 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.03521 * 179.97438 * 19 7 6 34 34 H 1.08003 * 119.95451 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2001 1.1381 1.1996 6 6 5.5763 1.0242 1.2041 7 6 6.2712 0.9690 0.0019 8 16 8.0277 0.8310 0.0026 9 6 8.4338 0.7992 1.7703 10 6 9.9494 0.6808 1.9433 11 6 10.2867 0.6538 3.4119 12 1 9.4989 0.7154 4.1481 13 6 11.6010 0.5505 3.8156 14 7 12.5602 0.4750 2.9190 15 14 12.0191 0.5177 5.6359 16 1 11.3548 -0.6463 6.2755 17 1 13.4900 0.4015 5.8039 18 1 11.5449 1.7713 6.2753 19 6 5.5772 1.0232 -1.2011 20 6 4.2007 1.1322 -1.1977 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 3.6598 1.1852 2.1336 27 1 6.1123 0.9823 2.1408 28 1 8.0857 1.7193 2.2397 29 1 7.9462 -0.0552 2.2397 30 1 10.2979 -0.2391 1.4739 31 1 10.4365 1.5355 1.4740 32 1 13.4848 0.4020 3.2031 33 1 6.1141 0.9810 -2.1372 34 1 3.6609 1.1749 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610480515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:30 Heat of formation + Delta-G solvation = -54.755267 kcal Electronic energy + Delta-G solvation = -15114.376122 eV Core-core repulsion = 12523.181382 eV Total energy + Delta-G solvation = -2591.194740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32224 -38.43237 -35.85191 -33.26508 -32.92371 -31.91507 -28.25925 -27.39480 -26.26280 -24.05474 -22.89976 -22.44415 -18.72262 -18.60081 -17.31653 -17.12287 -16.94397 -16.54497 -15.85033 -15.72608 -15.57493 -15.35672 -14.49923 -14.43046 -13.96984 -13.80074 -13.50812 -13.14970 -12.95122 -12.57929 -12.40670 -12.28563 -12.17715 -12.04069 -11.74915 -11.35973 -11.04329 -10.65802 -10.61592 -10.58747 -9.97010 -8.42226 -8.25265 -6.38984 0.11016 0.39057 0.59019 1.40726 1.43998 1.51960 1.54355 2.39429 2.50663 3.08380 3.20698 3.79902 3.93356 4.00258 4.14458 4.24309 4.27800 4.38328 4.45024 4.57338 4.59910 4.65400 4.75770 4.80249 4.90280 5.04522 5.27247 5.32075 5.33078 5.42965 5.55769 5.70063 5.91233 6.07434 6.24826 6.74335 7.30663 8.86481 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.038669 B = 0.003641 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.916310 B = 7688.556791 C = 8288.230148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.107 3.893 4 C -0.110 4.110 5 C -0.082 4.082 6 C -0.152 4.152 7 C -0.084 4.084 8 S -0.162 6.162 9 C -0.067 4.067 10 C 0.044 3.956 11 C -0.545 4.545 12 H 0.068 0.932 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.264 1.264 19 C -0.116 4.116 20 C -0.079 4.079 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.000 1.000 31 H 0.001 0.999 32 H 0.267 0.733 33 H 0.137 0.863 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.526 2.340 -5.973 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.113 4.113 5 C -0.101 4.101 6 C -0.176 4.176 7 C -0.197 4.197 8 S 0.084 5.916 9 C -0.215 4.215 10 C 0.006 3.994 11 C -0.584 4.584 12 H 0.086 0.914 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.140 4.140 20 C -0.098 4.098 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.340 2.093 -6.895 23.474 hybrid contribution -0.132 0.155 1.774 1.786 sum -22.473 2.248 -5.121 23.158 Atomic orbital electron populations 1.22941 0.79314 1.03724 1.01157 1.87952 1.21524 1.28339 1.95654 1.21381 0.88079 0.84918 1.02517 1.19880 0.95457 1.02787 0.93206 1.21170 0.92844 0.97238 0.98897 1.21368 0.95691 1.03774 0.96756 1.22040 0.96220 1.03888 0.97567 1.85592 1.00712 1.91196 1.14082 1.23632 1.01921 1.04439 0.91490 1.18689 0.88156 0.95916 0.96672 1.21488 0.93113 1.51584 0.92214 0.91376 1.26015 0.96182 0.94256 1.03128 1.70101 1.00564 1.50415 1.35929 0.85397 0.77096 0.79342 0.78602 1.18982 1.20795 1.18902 1.20969 0.94715 1.02044 0.96231 1.21235 0.92816 0.97014 0.98783 0.92960 0.92660 0.88987 0.90432 0.91035 0.83891 0.85941 0.89877 0.90061 0.98166 0.98069 0.92470 0.84554 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.21 10.69 -148.98 -1.59 -9.80 16 3 C 0.11 1.77 6.06 71.24 0.43 2.20 16 4 C -0.11 -2.47 5.51 -19.83 -0.11 -2.58 16 5 C -0.08 -2.04 9.69 22.25 0.22 -1.82 16 6 C -0.15 -4.61 9.36 22.41 0.21 -4.40 16 7 C -0.08 -2.74 6.11 22.62 0.14 -2.60 16 8 S -0.16 -6.27 21.92 -56.49 -1.24 -7.51 16 9 C -0.07 -2.86 4.27 71.98 0.31 -2.55 16 10 C 0.04 2.37 4.98 29.85 0.15 2.52 16 11 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 12 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 13 C 0.00 0.17 5.46 84.65 0.46 0.63 16 14 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 15 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 19 C -0.12 -3.16 9.79 22.41 0.22 -2.94 16 20 C -0.08 -1.77 9.69 22.25 0.22 -1.55 16 21 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 26 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.12 3.80 5.88 -2.91 -0.02 3.78 16 28 H 0.08 3.38 7.75 -2.39 -0.02 3.36 16 29 H 0.08 3.34 7.75 -2.39 -0.02 3.32 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -66.44 306.29 4.27 -62.17 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.07 Total: 7.83 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 3.72 Total: -42.03 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.28 Total: -56.33 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.59 Total: -9.80 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.24 Total: -7.51 kcal Total: -66.44 4.27 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610480515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.417 kcal (2) G-P(sol) polarization free energy of solvation -66.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds