Wall clock time and date at job start Sun Mar 29 2020 22:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.21211 * 119.99329 * 119.99983 * 4 2 1 6 6 O 1.34307 * 120.00428 * 299.72354 * 4 2 1 7 7 C 1.34913 * 117.00319 * 179.97438 * 6 4 2 8 8 H 1.07995 * 119.99818 * 0.02562 * 7 6 4 9 9 C 1.38752 * 120.00108 * 180.02562 * 7 6 4 10 10 N 1.31448 * 120.00068 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00155 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47142 * 59.99645 * 11 9 7 13 13 H 1.48500 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47018 * 300.00159 * 11 9 7 15 15 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 16 16 C 1.38239 * 119.97436 * 359.73131 * 15 2 1 17 17 C 1.38200 * 120.02794 * 179.72378 * 16 15 2 18 18 C 1.38459 * 119.97114 * 0.57011 * 17 16 15 19 19 F 1.35098 * 120.02712 * 179.68176 * 18 17 16 20 20 C 1.38463 * 119.95077 * 359.70299 * 18 17 16 21 21 C 1.38205 * 119.97120 * 359.97438 * 20 18 17 22 22 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 23 23 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 24 24 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 27 27 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 28 28 H 0.97001 * 120.00028 * 180.02562 * 10 9 7 29 29 H 1.08006 * 119.99093 * 359.97438 * 16 15 2 30 30 H 1.08003 * 120.01679 * 180.25213 * 17 16 15 31 31 H 1.08002 * 120.01565 * 179.97438 * 20 18 17 32 32 H 1.07995 * 119.98942 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7290 -1.6959 1.1194 6 8 1.7123 -0.2482 2.4504 7 6 2.1939 -0.9308 3.5098 8 1 2.8072 -1.8061 3.3546 9 6 1.9014 -0.5083 4.7986 10 7 1.1545 0.5568 4.9875 11 14 2.5687 -1.4531 6.2654 12 1 4.0530 -1.4576 6.2176 13 1 2.1164 -0.8019 7.5211 14 1 2.0679 -2.8505 6.2236 15 6 2.0323 -0.7105 -1.2304 16 6 1.1336 -1.2406 -2.1371 17 6 1.5930 -1.8874 -3.2687 18 6 2.9541 -2.0147 -3.4881 19 9 3.4045 -2.6524 -4.5906 20 6 3.8535 -1.4883 -2.5763 21 6 3.3916 -0.8361 -1.4488 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.9503 0.8524 5.8885 29 1 0.0718 -1.1458 -1.9632 30 1 0.8906 -2.2980 -3.9791 31 1 4.9155 -1.5874 -2.7462 32 1 4.0928 -0.4257 -0.7373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728646632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:24 Heat of formation + Delta-G solvation = -107.508256 kcal Electronic energy + Delta-G solvation = -18320.927962 eV Core-core repulsion = 15161.232505 eV Total energy + Delta-G solvation = -3159.695457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.77225 -40.03346 -38.39166 -35.45812 -34.51165 -32.12099 -31.09538 -29.11884 -27.12572 -25.56450 -23.58758 -22.55759 -21.82243 -19.16866 -17.69393 -17.58607 -16.49363 -15.92504 -15.53378 -15.45122 -14.65073 -14.53656 -14.32643 -14.18613 -13.44053 -13.22010 -12.90066 -12.48360 -12.41335 -11.97124 -11.78163 -11.63831 -11.37031 -11.24765 -11.12069 -10.77442 -10.57801 -10.47258 -10.29060 -9.78936 -8.99722 -8.82511 -8.57669 -8.37458 -6.41853 -4.09426 1.29972 1.43045 3.12143 3.18128 3.21799 3.51752 3.68096 3.99765 4.39659 4.55931 4.77502 4.88649 5.00885 5.09547 5.31202 5.35765 5.48553 5.61091 5.87476 5.91675 6.01773 6.05939 6.13544 6.20119 6.26035 6.36894 6.50577 6.54184 6.75428 6.87538 7.07859 7.39055 7.94764 8.70474 9.07353 9.85684 10.75903 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.036488 B = 0.005428 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.185312 B = 5157.281239 C = 5538.226109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.008 4.008 3 C -0.135 4.135 4 C 0.406 3.594 5 O -0.549 6.549 6 O -0.208 6.208 7 C -0.383 4.383 8 H 0.094 0.906 9 C 0.044 3.956 10 N -0.865 5.865 11 Si 0.942 3.058 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.270 1.270 15 C -0.062 4.062 16 C -0.088 4.088 17 C -0.159 4.159 18 C 0.088 3.912 19 F -0.147 7.147 20 C -0.156 4.156 21 C -0.054 4.054 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.270 0.730 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 0.558 -12.534 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.010 4.010 3 C -0.192 4.192 4 C 0.252 3.748 5 O -0.445 6.445 6 O -0.115 6.115 7 C -0.459 4.459 8 H 0.111 0.889 9 C -0.160 4.160 10 N -0.502 5.502 11 Si 0.766 3.234 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.195 1.195 15 C -0.062 4.062 16 C -0.106 4.106 17 C -0.178 4.178 18 C 0.068 3.932 19 F -0.125 7.125 20 C -0.175 4.175 21 C -0.072 4.072 22 H 0.097 0.903 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.162 0.417 -12.394 12.402 hybrid contribution 0.459 -0.698 0.585 1.020 sum 0.297 -0.281 -11.809 11.816 Atomic orbital electron populations 1.21923 0.92165 1.02625 1.03160 1.19146 0.97276 0.95707 0.88830 1.21845 1.01348 0.92950 1.03090 1.22828 0.81657 0.84592 0.85725 1.90572 1.39091 1.27536 1.87345 1.83857 1.63764 1.51350 1.12511 1.21163 1.31954 1.10827 0.81951 0.88871 1.25293 0.96371 0.96512 0.97865 1.69977 1.34873 1.22673 1.22684 0.85774 0.79268 0.79205 0.79118 1.19530 1.20371 1.19529 1.19544 0.93470 0.98307 0.94876 1.21017 1.00322 0.96347 0.92886 1.21019 0.93610 1.03280 0.99845 1.17705 0.92835 0.97629 0.84983 1.91460 1.89948 1.79844 1.51293 1.21067 0.99755 1.01465 0.95171 1.20858 0.95408 0.95899 0.95008 0.90300 0.91718 0.92094 0.92308 0.91919 0.90289 0.92067 0.84540 0.85055 0.85029 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.06 37.16 0.26 -1.94 16 2 C -0.01 -0.15 0.80 -156.81 -0.12 -0.27 16 3 C -0.14 -2.13 8.22 37.16 0.31 -1.83 16 4 C 0.41 9.77 6.37 36.01 0.23 10.00 16 5 O -0.55 -14.49 14.34 -19.05 -0.27 -14.76 16 6 O -0.21 -5.77 9.55 -20.67 -0.20 -5.96 16 7 C -0.38 -11.15 9.64 30.92 0.30 -10.85 16 8 H 0.09 2.75 6.86 -52.49 -0.36 2.39 16 9 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 10 N -0.87 -24.82 13.67 55.48 0.76 -24.06 16 11 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 15 C -0.06 -1.02 4.38 -104.62 -0.46 -1.48 16 16 C -0.09 -1.25 8.97 -39.59 -0.36 -1.60 16 17 C -0.16 -2.13 10.03 -39.51 -0.40 -2.52 16 18 C 0.09 1.27 7.30 -39.42 -0.29 0.98 16 19 F -0.15 -2.09 17.27 2.25 0.04 -2.05 16 20 C -0.16 -2.29 10.03 -39.51 -0.40 -2.68 16 21 C -0.05 -0.88 7.93 -39.59 -0.31 -1.19 16 22 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 23 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 24 H 0.06 0.94 7.50 -51.93 -0.39 0.55 16 25 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.14 1.63 5.89 -52.48 -0.31 1.33 16 30 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.13 2.18 7.51 -52.49 -0.39 1.78 16 LS Contribution 283.39 15.07 4.27 4.27 Total: -1.00 -32.01 283.39 -5.23 -37.24 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.47 Total: 1.49 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.33 Total: -12.28 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.76 Total: -24.06 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.47 Total: -20.73 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.01 -5.23 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728646632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.264 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds