Wall clock time and date at job start Sun Mar 29 2020 22:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 O 1.21211 * 119.99329 * 119.99983 * 4 2 1 6 6 O 1.34307 * 120.00428 * 299.72354 * 4 2 1 7 7 C 1.34913 * 117.00319 * 179.97438 * 6 4 2 8 8 H 1.07995 * 119.99818 * 0.02562 * 7 6 4 9 9 C 1.38752 * 120.00108 * 180.02562 * 7 6 4 10 10 N 1.31448 * 120.00068 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00155 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47142 * 59.99645 * 11 9 7 13 13 H 1.48500 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47018 * 300.00159 * 11 9 7 15 15 C 1.50696 * 109.47197 * 239.99434 * 2 1 3 16 16 C 1.38239 * 119.97436 * 359.73131 * 15 2 1 17 17 C 1.38200 * 120.02794 * 179.72378 * 16 15 2 18 18 C 1.38459 * 119.97114 * 0.57011 * 17 16 15 19 19 F 1.35098 * 120.02712 * 179.68176 * 18 17 16 20 20 C 1.38463 * 119.95077 * 359.70299 * 18 17 16 21 21 C 1.38205 * 119.97120 * 359.97438 * 20 18 17 22 22 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 23 23 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 24 24 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 27 27 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 28 28 H 0.97001 * 120.00028 * 180.02562 * 10 9 7 29 29 H 1.08006 * 119.99093 * 359.97438 * 16 15 2 30 30 H 1.08003 * 120.01679 * 180.25213 * 17 16 15 31 31 H 1.08002 * 120.01565 * 179.97438 * 20 18 17 32 32 H 1.07995 * 119.98942 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7290 -1.6959 1.1194 6 8 1.7123 -0.2482 2.4504 7 6 2.1939 -0.9308 3.5098 8 1 2.8072 -1.8061 3.3546 9 6 1.9014 -0.5083 4.7986 10 7 1.1545 0.5568 4.9875 11 14 2.5687 -1.4531 6.2654 12 1 4.0530 -1.4576 6.2176 13 1 2.1164 -0.8019 7.5211 14 1 2.0679 -2.8505 6.2236 15 6 2.0323 -0.7105 -1.2304 16 6 1.1336 -1.2406 -2.1371 17 6 1.5930 -1.8874 -3.2687 18 6 2.9541 -2.0147 -3.4881 19 9 3.4045 -2.6524 -4.5906 20 6 3.8535 -1.4883 -2.5763 21 6 3.3916 -0.8361 -1.4488 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.9503 0.8524 5.8885 29 1 0.0718 -1.1458 -1.9632 30 1 0.8906 -2.2980 -3.9791 31 1 4.9155 -1.5874 -2.7462 32 1 4.0928 -0.4257 -0.7373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728646632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:24 Heat of formation + Delta-G solvation = -125.598041 kcal Electronic energy + Delta-G solvation = -18321.712394 eV Core-core repulsion = 15161.232505 eV Total energy + Delta-G solvation = -3160.479889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.89242 -41.62995 -39.96380 -37.27494 -36.10981 -34.24600 -32.23297 -30.32802 -28.37797 -27.64711 -25.05985 -23.72349 -23.33477 -20.75777 -19.80970 -18.73541 -18.17600 -17.30204 -17.05045 -16.58050 -16.46297 -16.32030 -15.88796 -15.46962 -14.72706 -14.56899 -14.45239 -13.76294 -13.71875 -13.60055 -13.24051 -13.04246 -12.93951 -12.86227 -12.43996 -12.30474 -12.21517 -12.13735 -11.84372 -11.69823 -10.81999 -10.67878 -10.02818 -9.57227 -8.52416 -6.31574 0.11137 0.30186 1.32165 1.33840 1.48749 1.66739 2.10059 2.48924 2.93834 2.99060 3.26157 3.46577 3.73012 3.95809 4.01164 4.05291 4.34632 4.46731 4.51536 4.74312 4.75965 4.83172 4.95421 4.98155 5.01169 5.12425 5.15143 5.24023 5.26084 5.37507 5.59631 5.84712 5.92480 6.68916 6.93056 7.80371 8.67487 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.036488 B = 0.005428 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.185312 B = 5157.281239 C = 5538.226109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 C -0.131 4.131 4 C 0.403 3.597 5 O -0.578 6.578 6 O -0.234 6.234 7 C -0.421 4.421 8 H 0.077 0.923 9 C 0.000 4.000 10 N -0.899 5.899 11 Si 1.012 2.988 12 H -0.264 1.264 13 H -0.259 1.259 14 H -0.264 1.264 15 C -0.081 4.081 16 C -0.084 4.084 17 C -0.150 4.150 18 C 0.082 3.918 19 F -0.145 7.145 20 C -0.159 4.159 21 C -0.073 4.073 22 H 0.058 0.942 23 H 0.111 0.889 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.278 0.722 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 0.272 -13.706 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.004 4.004 3 C -0.188 4.188 4 C 0.251 3.749 5 O -0.475 6.475 6 O -0.142 6.142 7 C -0.497 4.497 8 H 0.095 0.905 9 C -0.201 4.201 10 N -0.536 5.536 11 Si 0.831 3.169 12 H -0.189 1.189 13 H -0.183 1.183 14 H -0.188 1.188 15 C -0.081 4.081 16 C -0.101 4.101 17 C -0.168 4.168 18 C 0.063 3.937 19 F -0.124 7.124 20 C -0.178 4.178 21 C -0.091 4.091 22 H 0.077 0.923 23 H 0.129 0.871 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.938 0.142 -13.589 13.622 hybrid contribution 0.724 -0.633 0.811 1.258 sum -0.214 -0.490 -12.778 12.790 Atomic orbital electron populations 1.21953 0.90080 1.03017 1.04458 1.19276 0.98853 0.96120 0.86193 1.21841 1.01071 0.91832 1.04061 1.24233 0.80136 0.84162 0.86384 1.90532 1.40159 1.29021 1.87803 1.83886 1.64684 1.52037 1.13614 1.21316 1.33545 1.11443 0.83428 0.90544 1.26412 0.96060 0.97323 1.00261 1.70056 1.35617 1.23923 1.24002 0.84770 0.78777 0.77938 0.75424 1.18857 1.18272 1.18848 1.19551 0.93952 0.99713 0.94919 1.21284 1.01225 0.95318 0.92320 1.21364 0.93630 1.01974 0.99839 1.17863 0.93437 0.97483 0.84884 1.91468 1.90026 1.79758 1.51105 1.21204 1.00877 1.01003 0.94701 1.20833 0.95498 0.97129 0.95627 0.92283 0.87087 0.92159 0.92882 0.87924 0.92154 0.91246 0.81923 0.81837 0.83561 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 7.06 71.98 0.51 -3.57 16 2 C 0.00 -0.12 0.80 -53.67 -0.04 -0.16 16 3 C -0.13 -4.08 8.22 71.98 0.59 -3.49 16 4 C 0.40 20.05 6.37 71.24 0.45 20.50 16 5 O -0.58 -31.66 14.34 20.77 0.30 -31.36 16 6 O -0.23 -13.55 9.55 14.98 0.14 -13.41 16 7 C -0.42 -25.51 9.64 67.94 0.66 -24.86 16 8 H 0.08 4.74 6.86 -2.91 -0.02 4.72 16 9 C 0.00 0.00 5.49 84.87 0.47 0.47 16 10 N -0.90 -52.40 13.67 21.62 0.30 -52.10 16 11 Si 1.01 43.46 29.55 68.60 2.03 45.48 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 15 C -0.08 -2.58 4.38 -19.86 -0.09 -2.67 16 16 C -0.08 -2.12 8.97 22.26 0.20 -1.93 16 17 C -0.15 -3.49 10.03 22.31 0.22 -3.27 16 18 C 0.08 2.19 7.30 22.38 0.16 2.35 16 19 F -0.14 -3.78 17.27 44.97 0.78 -3.00 16 20 C -0.16 -4.51 10.03 22.32 0.22 -4.28 16 21 C -0.07 -2.37 7.93 22.26 0.18 -2.19 16 22 H 0.06 1.98 8.12 -2.38 -0.02 1.96 16 23 H 0.11 2.24 7.52 -2.39 -0.02 2.22 16 24 H 0.06 1.77 7.50 -2.39 -0.02 1.75 16 25 H 0.05 1.68 7.39 -2.39 -0.02 1.66 16 26 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 28 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.16 3.20 5.89 -2.91 -0.02 3.18 16 30 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.11 3.99 7.51 -2.91 -0.02 3.97 16 Total: -1.00 -71.63 283.39 8.21 -63.42 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.13 Total: 14.06 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 3.53 Total: -23.09 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.30 Total: -52.10 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: 0.44 Total: -44.77 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.63 8.21 -63.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728646632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.178 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds