Wall clock time and date at job start Sun Mar 29 2020 22:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46702 * 2 1 4 4 C 1.50702 * 109.47091 * 240.00012 * 2 1 3 5 5 O 1.21210 * 119.99693 * 239.99735 * 4 2 1 6 6 O 1.34305 * 119.99745 * 59.99919 * 4 2 1 7 7 C 1.34930 * 116.99550 * 179.97438 * 6 4 2 8 8 H 1.07995 * 119.99848 * 359.97438 * 7 6 4 9 9 C 1.38751 * 119.99605 * 179.97438 * 7 6 4 10 10 N 1.31439 * 120.00357 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99787 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47423 * 89.99946 * 11 9 7 13 13 H 1.48494 * 109.47448 * 210.00031 * 11 9 7 14 14 H 1.48506 * 109.47303 * 330.00092 * 11 9 7 15 15 C 1.50695 * 109.47277 * 119.99760 * 2 1 3 16 16 C 1.38266 * 119.98923 * 359.95861 * 15 2 1 17 17 C 1.38226 * 120.05404 * 180.02562 * 16 15 2 18 18 C 1.38217 * 120.02522 * 0.03782 * 17 16 15 19 19 C 1.38434 * 119.97400 * 359.97438 * 18 17 16 20 20 F 1.35099 * 120.02897 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98906 * 180.02562 * 15 2 1 22 22 H 1.09005 * 109.47039 * 299.99769 * 1 2 3 23 23 H 1.08991 * 109.47476 * 60.00011 * 1 2 3 24 24 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46656 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46959 * 299.99436 * 3 2 1 27 27 H 1.08993 * 109.47130 * 59.99861 * 3 2 1 28 28 H 0.97000 * 120.00474 * 180.02562 * 10 9 7 29 29 H 1.08008 * 119.97418 * 0.04219 * 16 15 2 30 30 H 1.07998 * 119.98497 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.01075 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.01219 * 0.24814 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7292 -1.6959 -1.1192 6 8 1.7078 -0.2515 -2.4503 7 6 2.1907 -0.9335 -3.5097 8 1 2.8084 -1.8056 -3.3544 9 6 1.8936 -0.5142 -4.7985 10 7 1.1422 0.5475 -4.9875 11 14 2.5627 -1.4579 -6.2652 12 1 1.5979 -2.5177 -6.6540 13 1 2.7606 -0.5266 -7.4047 14 1 3.8617 -2.0799 -5.9029 15 6 2.0324 -0.7103 1.2304 16 6 1.1337 -1.2349 2.1409 17 6 1.5930 -1.8863 3.2703 18 6 2.9515 -2.0132 3.4910 19 6 3.8523 -1.4882 2.5803 20 9 5.1804 -1.6120 2.7947 21 6 3.3909 -0.8359 1.4491 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6765 1.9563 0.8899 28 1 0.9342 0.8404 -5.8885 29 1 0.0719 -1.1359 1.9694 30 1 0.8901 -2.2960 3.9805 31 1 3.3102 -2.5225 4.3733 32 1 4.0927 -0.4217 0.7405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736873519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:26 Heat of formation + Delta-G solvation = -107.233071 kcal Electronic energy + Delta-G solvation = -18425.909446 eV Core-core repulsion = 15266.225922 eV Total energy + Delta-G solvation = -3159.683524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.68242 -40.02567 -38.39804 -35.51519 -34.54031 -32.12613 -30.65568 -29.54907 -27.04023 -25.56191 -23.71630 -22.51710 -21.74110 -19.26488 -17.68591 -17.09792 -16.46113 -15.99939 -15.75679 -15.37517 -14.90001 -14.56136 -14.41544 -13.91438 -13.60690 -13.16971 -12.90368 -12.45169 -12.09294 -11.86315 -11.77664 -11.59975 -11.51368 -11.34015 -11.19686 -10.73905 -10.61533 -10.42995 -10.31413 -9.78294 -8.93006 -8.73391 -8.57748 -8.47770 -6.41630 -4.09080 1.32219 1.41889 3.10676 3.18867 3.24650 3.51582 3.68220 3.99862 4.38207 4.55426 4.73044 4.93578 5.10878 5.14125 5.31326 5.33168 5.45096 5.57394 5.82818 5.89566 5.97842 6.11600 6.14350 6.20613 6.29178 6.37150 6.47919 6.54886 6.73611 6.87075 7.08883 7.39899 7.95130 8.70768 9.07721 9.85646 10.76238 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.005944 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.344902 B = 4709.519363 C = 5158.375527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.136 4.136 4 C 0.406 3.594 5 O -0.548 6.548 6 O -0.208 6.208 7 C -0.382 4.382 8 H 0.094 0.906 9 C 0.043 3.957 10 N -0.865 5.865 11 Si 0.941 3.059 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.267 1.267 15 C -0.024 4.024 16 C -0.126 4.126 17 C -0.098 4.098 18 C -0.161 4.161 19 C 0.092 3.908 20 F -0.144 7.144 21 C -0.115 4.115 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.269 0.731 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 0.070 13.411 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 C -0.193 4.193 4 C 0.252 3.748 5 O -0.444 6.444 6 O -0.115 6.115 7 C -0.458 4.458 8 H 0.112 0.888 9 C -0.161 4.161 10 N -0.502 5.502 11 Si 0.766 3.234 12 H -0.199 1.199 13 H -0.203 1.203 14 H -0.191 1.191 15 C -0.024 4.024 16 C -0.144 4.144 17 C -0.116 4.116 18 C -0.180 4.180 19 C 0.073 3.927 20 F -0.123 7.123 21 C -0.134 4.134 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.971 -0.051 13.238 13.273 hybrid contribution 0.637 -0.588 -0.761 1.153 sum -0.334 -0.639 12.477 12.498 Atomic orbital electron populations 1.21916 0.91945 1.02690 1.03196 1.19182 0.97404 0.95773 0.88779 1.21852 1.01398 0.92866 1.03170 1.22790 0.81672 0.84621 0.85733 1.90582 1.39038 1.27479 1.87330 1.83859 1.63552 1.51577 1.12486 1.21225 1.31625 1.11069 0.81926 0.88798 1.25295 0.96393 0.96506 0.97866 1.69981 1.34793 1.22844 1.22588 0.85709 0.79416 0.78788 0.79518 1.19897 1.20321 1.19140 1.19308 0.92397 0.96388 0.94355 1.21224 1.00272 0.98641 0.94303 1.20891 0.94455 0.98657 0.97554 1.21045 0.93511 1.03279 1.00121 1.17644 0.77316 1.01366 0.96350 1.91471 1.31609 1.94345 1.94850 1.20967 0.96532 0.99981 0.95946 0.91667 0.90253 0.92034 0.92302 0.90186 0.91853 0.92113 0.84831 0.85245 0.85232 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.06 37.16 0.26 -1.93 16 2 C -0.01 -0.18 0.80 -156.81 -0.12 -0.31 16 3 C -0.14 -2.20 8.22 37.16 0.31 -1.89 16 4 C 0.41 9.93 6.37 36.01 0.23 10.16 16 5 O -0.55 -14.77 14.35 -19.05 -0.27 -15.05 16 6 O -0.21 -5.82 9.55 -20.71 -0.20 -6.02 16 7 C -0.38 -11.25 9.65 30.92 0.30 -10.95 16 8 H 0.09 2.81 6.86 -52.49 -0.36 2.45 16 9 C 0.04 1.21 5.49 -17.53 -0.10 1.12 16 10 N -0.87 -24.98 13.67 55.48 0.76 -24.22 16 11 Si 0.94 21.32 29.55 -169.99 -5.02 16.30 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 C -0.02 -0.41 4.38 -104.64 -0.46 -0.87 16 16 C -0.13 -1.77 8.97 -39.58 -0.36 -2.12 16 17 C -0.10 -1.20 10.04 -39.59 -0.40 -1.59 16 18 C -0.16 -2.13 10.03 -39.52 -0.40 -2.53 16 19 C 0.09 1.47 7.30 -39.42 -0.29 1.19 16 20 F -0.14 -2.34 17.27 2.25 0.04 -2.30 16 21 C -0.12 -2.03 7.91 -39.51 -0.31 -2.34 16 22 H 0.06 0.78 7.51 -51.93 -0.39 0.39 16 23 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 24 H 0.06 0.95 7.51 -51.93 -0.39 0.56 16 25 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 26 H 0.08 1.39 8.11 -51.93 -0.42 0.96 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.13 1.58 5.89 -52.48 -0.31 1.27 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.13 2.46 7.51 -52.49 -0.39 2.06 16 LS Contribution 283.39 15.07 4.27 4.27 Total: -1.00 -32.63 283.39 -5.23 -37.86 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.47 Total: 1.22 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.33 Total: -12.07 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.76 Total: -24.22 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.47 Total: -21.07 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.63 -5.23 -37.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736873519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.374 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds