Wall clock time and date at job start Sun Mar 29 2020 22:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38470 * 119.82786 * 2 1 4 4 C 1.37835 * 120.22966 * 180.02562 * 3 2 1 5 5 C 1.39715 * 119.87076 * 359.97438 * 4 3 2 6 6 C 1.47560 * 120.17224 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.34733 * 120.00156 * 0.02562 * 6 5 4 9 9 C 1.45195 * 117.00157 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46773 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00386 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00166 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99754 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47290 * 89.99829 * 15 13 11 17 17 H 1.48505 * 109.46907 * 209.99717 * 15 13 11 18 18 H 1.48500 * 109.47455 * 329.99486 * 15 13 11 19 19 C 1.39878 * 119.65669 * 359.97438 * 5 4 3 20 20 F 1.35104 * 120.11514 * 180.02562 * 19 5 4 21 21 C 1.38209 * 119.82339 * 180.25323 * 2 1 3 22 22 H 1.08997 * 109.47079 * 90.00183 * 1 2 3 23 23 H 1.09001 * 109.47078 * 209.99849 * 1 2 3 24 24 H 1.09001 * 109.47444 * 330.00272 * 1 2 3 25 25 H 1.08007 * 119.88202 * 0.02562 * 3 2 1 26 26 H 1.07993 * 120.06289 * 179.97438 * 4 3 2 27 27 H 1.09006 * 109.46932 * 299.99579 * 9 8 6 28 28 H 1.09005 * 109.47323 * 59.99148 * 9 8 6 29 29 H 1.08992 * 109.47154 * 299.99716 * 10 9 8 30 30 H 1.08999 * 109.47160 * 59.99996 * 10 9 8 31 31 H 0.97000 * 119.99821 * 180.02562 * 14 13 11 32 32 H 1.08001 * 119.93976 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2013 0.0000 4 6 3.5741 1.2109 -0.0005 5 6 4.2784 0.0043 -0.0005 6 6 5.7540 0.0069 -0.0017 7 8 6.3633 -1.0442 -0.0021 8 8 6.4256 1.1749 -0.0022 9 6 7.8757 1.1014 -0.0039 10 6 8.4580 2.5163 -0.0049 11 6 9.9631 2.4399 -0.0060 12 1 10.4551 1.4786 -0.0064 13 6 10.7121 3.5977 -0.0076 14 7 12.0255 3.5312 -0.0091 15 14 9.8611 5.2605 -0.0076 16 1 9.6371 5.7020 1.3924 17 1 10.7142 6.2532 -0.7092 18 1 8.5554 5.1485 -0.7061 19 6 3.5775 -1.2062 0.0006 20 9 4.2492 -2.3784 0.0011 21 6 2.1943 -1.1990 -0.0053 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6510 2.1339 0.0004 26 1 4.1085 2.1494 -0.0009 27 1 8.2136 0.5697 0.8857 28 1 8.2116 0.5699 -0.8943 29 1 8.1202 3.0476 -0.8946 30 1 8.1222 3.0480 0.8854 31 1 12.5523 4.3456 -0.0098 32 1 1.6505 -2.1321 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750431794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:37 Heat of formation + Delta-G solvation = -119.341948 kcal Electronic energy + Delta-G solvation = -17482.948170 eV Core-core repulsion = 14322.739565 eV Total energy + Delta-G solvation = -3160.208605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.00428 -40.21483 -38.98082 -36.16527 -33.46771 -33.10867 -30.94758 -30.72621 -28.10918 -25.29470 -23.07468 -22.96505 -20.95031 -20.57889 -18.00668 -17.22502 -16.79307 -16.68978 -16.23011 -15.83378 -15.52961 -14.73021 -14.38042 -14.20658 -13.99612 -13.60387 -13.47486 -13.13962 -12.61124 -12.43217 -12.13710 -12.03403 -11.57850 -11.51193 -11.29661 -10.71508 -10.60279 -10.00584 -9.94202 -9.72227 -9.36032 -9.28568 -8.97210 -8.63237 -6.13567 -4.14894 0.39502 0.90097 2.55642 2.94905 3.26949 3.34268 3.38068 3.43523 3.90200 4.30944 4.37589 4.43519 4.70972 4.86537 4.95643 5.11608 5.16812 5.19828 5.34163 5.62897 5.71312 5.75377 5.90205 5.95913 5.96592 6.08990 6.43367 6.49945 6.72266 7.15799 7.20238 7.61169 8.06252 8.39071 8.88362 9.45685 10.99057 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035340 B = 0.004371 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.102688 B = 6403.909056 C = 7170.262171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.148 4.148 4 C -0.028 4.028 5 C -0.163 4.163 6 C 0.500 3.500 7 O -0.499 6.499 8 O -0.355 6.355 9 C 0.083 3.917 10 C -0.009 4.009 11 C -0.528 4.528 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 C 0.166 3.834 20 F -0.114 7.114 21 C -0.173 4.173 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.152 0.848 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.033 -4.807 -0.034 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.029 4.029 3 C -0.166 4.166 4 C -0.046 4.046 5 C -0.165 4.165 6 C 0.343 3.657 7 O -0.389 6.389 8 O -0.272 6.272 9 C 0.011 3.989 10 C -0.046 4.046 11 C -0.566 4.566 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.709 3.291 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.188 1.188 19 C 0.146 3.854 20 F -0.092 7.092 21 C -0.192 4.192 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.155 0.845 26 H 0.169 0.831 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.591 -5.038 -0.037 25.102 hybrid contribution 0.092 0.554 0.017 0.562 sum -24.499 -4.484 -0.020 24.906 Atomic orbital electron populations 1.20902 0.90041 1.03561 1.03103 1.20010 0.96702 0.92170 0.93995 1.21115 0.93821 0.98154 1.03473 1.21486 0.94065 0.97446 0.91636 1.19371 0.91100 0.93712 1.12340 1.20766 0.88028 0.82881 0.73986 1.90877 1.69993 1.32813 1.45187 1.86506 1.25158 1.32450 1.83098 1.23440 0.71651 1.01817 1.02008 1.19629 0.96607 0.90473 0.97898 1.20843 0.88039 0.95289 1.52416 0.90612 1.24942 0.94706 0.99253 0.94125 1.69895 1.04713 1.28806 1.50062 0.86742 0.80045 0.83630 0.78727 1.20040 1.21158 1.18767 1.17706 0.89797 0.80554 0.97342 1.91609 1.80422 1.44579 1.92637 1.20958 0.91409 0.99804 1.07024 0.90241 0.90927 0.90688 0.84453 0.83079 0.91536 0.91517 0.95329 0.95759 0.92411 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.00 36.01 0.36 -0.21 16 2 C -0.03 -0.23 5.88 -104.55 -0.62 -0.85 16 3 C -0.15 -1.27 9.67 -39.64 -0.38 -1.65 16 4 C -0.03 -0.32 9.62 -39.18 -0.38 -0.70 16 5 C -0.16 -2.37 5.88 -104.93 -0.62 -2.99 16 6 C 0.50 9.26 7.89 34.53 0.27 9.53 16 7 O -0.50 -10.65 15.13 -19.26 -0.29 -10.94 16 8 O -0.36 -6.90 9.47 -40.58 -0.38 -7.28 16 9 C 0.08 1.82 5.41 37.16 0.20 2.02 16 10 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 11 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 15 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 19 C 0.17 2.23 7.29 -38.94 -0.28 1.95 16 20 F -0.11 -1.80 15.55 2.25 0.04 -1.76 16 21 C -0.17 -1.68 9.66 -39.56 -0.38 -2.06 16 22 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 24 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 25 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 26 H 0.15 1.63 7.61 -52.49 -0.40 1.23 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 30 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 31 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 288.57 15.07 4.35 4.35 Total: -1.00 -32.78 288.57 -6.27 -39.05 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -3.71 Total: -4.66 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.38 Total: -8.73 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.68 Total: -18.23 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.78 -6.27 -39.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750431794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.292 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds