Wall clock time and date at job start Sun Mar 29 2020 23:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.36008 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38714 * 119.96999 * 359.72208 * 4 3 2 6 6 C 1.38090 * 120.01680 * 179.76658 * 5 4 3 7 7 C 1.38919 * 119.97730 * 0.53152 * 6 5 4 8 8 S 1.76199 * 120.02524 * 179.69958 * 7 6 5 9 9 C 1.81401 * 102.99973 * 0.02562 * 8 7 6 10 10 C 1.53003 * 109.47030 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47105 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99882 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99924 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00154 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99906 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47171 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46782 * 120.00432 * 15 13 11 18 18 H 1.48497 * 109.47492 * 240.00428 * 15 13 11 19 19 C 1.38921 * 119.95119 * 359.72030 * 7 6 5 20 20 C 1.38086 * 119.97064 * 0.02562 * 19 7 6 21 21 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 22 22 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 26 26 H 1.07994 * 119.99002 * 0.02562 * 5 4 3 27 27 H 1.08004 * 120.01237 * 180.25620 * 6 5 4 28 28 H 1.08997 * 109.47003 * 299.99690 * 9 8 7 29 29 H 1.08998 * 109.46751 * 60.00292 * 9 8 7 30 30 H 1.09002 * 109.47317 * 300.00306 * 10 9 8 31 31 H 1.09004 * 109.46969 * 60.00214 * 10 9 8 32 32 H 0.97004 * 119.99877 * 179.97438 * 14 13 11 33 33 H 1.08000 * 120.01352 * 179.97438 * 19 7 6 34 34 H 1.08005 * 119.98124 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.1991 0.4252 0.0069 6 6 5.5682 0.6051 0.0026 7 6 6.0997 1.8886 0.0030 8 16 7.8465 2.1195 0.0055 9 6 8.4827 0.4207 0.0061 10 6 10.0124 0.4491 0.0076 11 6 10.5410 -0.9622 0.0087 12 1 9.8545 -1.7959 0.0079 13 6 11.9010 -1.1890 0.0096 14 7 12.7369 -0.1737 0.0100 15 14 12.5562 -2.9383 0.0102 16 1 11.4186 -3.8930 0.0090 17 1 13.3862 -3.1564 -1.2016 18 1 13.3845 -3.1563 1.2233 19 6 5.2529 2.9899 0.0020 20 6 3.8841 2.8076 0.0010 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.7857 -0.5725 0.0110 27 1 6.2256 -0.2518 0.0033 28 1 8.1277 -0.0999 0.8955 29 1 8.1302 -0.0995 -0.8845 30 1 10.3671 0.9696 -0.8820 31 1 10.3653 0.9695 0.8980 32 1 13.6938 -0.3333 0.0110 33 1 5.6650 3.9882 0.0027 34 1 3.2256 3.6637 0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761072463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:10 Heat of formation + Delta-G solvation = -34.044555 kcal Electronic energy + Delta-G solvation = -15204.280255 eV Core-core repulsion = 12613.983599 eV Total energy + Delta-G solvation = -2590.296656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06613 -37.44297 -33.79300 -32.21420 -31.26319 -30.65347 -29.51074 -25.43239 -24.19284 -22.54789 -21.98660 -20.88401 -18.36773 -17.00715 -16.57269 -16.25757 -15.85971 -14.64282 -14.48101 -14.37448 -13.95712 -13.53044 -13.50607 -13.44336 -12.92243 -12.45733 -12.28621 -11.90491 -11.86111 -11.42187 -11.13742 -10.99932 -10.83263 -10.61674 -10.30221 -9.77665 -9.68597 -9.14379 -9.04201 -8.87404 -8.47024 -6.84247 -6.10847 -4.15665 1.35114 1.37958 2.08232 3.05526 3.11205 3.25620 3.33368 3.36823 3.73877 4.38086 4.66000 4.66788 4.83884 4.91543 4.98827 5.20278 5.25106 5.35511 5.44650 5.49884 5.64936 5.72878 5.87353 5.98816 6.04759 6.10706 6.32909 6.42681 6.62658 6.69267 7.35296 7.48886 7.56269 7.84507 8.21265 8.89081 9.48697 11.00051 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.003833 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.663927 B = 7302.737267 C = 8111.349337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.111 3.889 5 C -0.187 4.187 6 C -0.095 4.095 7 C -0.107 4.107 8 S -0.143 6.143 9 C -0.080 4.080 10 C 0.037 3.963 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.068 4.068 20 C -0.135 4.135 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.133 0.867 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.782 1.882 -0.016 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.234 6.234 4 C 0.063 3.937 5 C -0.208 4.208 6 C -0.120 4.120 7 C -0.220 4.220 8 S 0.103 5.897 9 C -0.228 4.228 10 C -0.002 4.002 11 C -0.562 4.562 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.092 4.092 20 C -0.155 4.155 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.992 3.074 -0.015 20.227 hybrid contribution -0.197 -2.387 -0.002 2.395 sum -20.189 0.688 -0.017 20.200 Atomic orbital electron populations 1.21768 0.92884 1.02756 1.03417 1.22751 0.95699 0.82278 1.01444 1.86057 1.19188 1.28990 1.89130 1.18899 0.82005 0.94144 0.98627 1.21113 0.93854 0.97934 1.07876 1.21124 0.94895 0.96339 0.99601 1.21889 0.98586 0.95838 1.05674 1.85619 0.95155 1.17418 1.91489 1.23997 1.04014 0.91024 1.03753 1.18927 0.84476 0.98111 0.98693 1.21101 0.91690 0.91484 1.51887 0.92327 1.25014 0.96947 0.97324 0.94959 1.69977 1.02703 1.30250 1.49911 0.86452 0.78983 0.84358 0.77719 1.19675 1.20853 1.20848 1.20604 0.91509 0.97976 0.99144 1.20290 0.94624 0.94729 1.05867 0.91584 0.91578 0.90467 0.92090 0.92093 0.85537 0.85148 0.90683 0.90687 0.95366 0.95370 0.92753 0.84914 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.47 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.86 10.14 -19.77 -0.20 -4.06 16 4 C 0.11 1.48 6.69 -39.23 -0.26 1.22 16 5 C -0.19 -2.51 9.03 -39.46 -0.36 -2.87 16 6 C -0.10 -1.46 9.36 -39.38 -0.37 -1.83 16 7 C -0.11 -1.74 6.11 -39.08 -0.24 -1.98 16 8 S -0.14 -2.68 21.92 -107.50 -2.36 -5.03 16 9 C -0.08 -1.65 4.27 37.16 0.16 -1.49 16 10 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 11 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 12 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.07 -0.97 9.79 -39.38 -0.39 -1.36 16 20 C -0.13 -1.76 9.98 -39.47 -0.39 -2.16 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 25 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 26 H 0.13 1.39 6.29 -52.49 -0.33 1.06 16 27 H 0.13 1.99 5.87 -52.48 -0.31 1.68 16 28 H 0.07 1.49 7.74 -51.93 -0.40 1.09 16 29 H 0.07 1.49 7.75 -51.92 -0.40 1.09 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -29.99 302.55 -8.83 -38.82 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.74 Total: -2.12 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.81 Total: -22.73 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.36 Total: -5.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.99 -8.83 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.779 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds