Wall clock time and date at job start Sun Mar 29 2020 22:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.93803 * 2 1 4 4 C 1.38434 * 120.35070 * 179.97438 * 3 2 1 5 5 C 1.37881 * 120.22080 * 0.25637 * 4 3 2 6 6 C 1.39678 * 119.87276 * 359.49173 * 5 4 3 7 7 C 1.47569 * 120.16736 * 180.25589 * 6 5 4 8 8 O 1.21488 * 119.99622 * 180.24759 * 7 6 5 9 9 O 1.34727 * 120.00145 * 0.25020 * 7 6 5 10 10 C 1.45204 * 116.99751 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47197 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47380 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99952 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00125 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00096 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47000 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47122 * 119.99894 * 16 14 12 19 19 H 1.48498 * 109.47204 * 240.00208 * 16 14 12 20 20 C 1.38271 * 119.93761 * 179.97438 * 2 1 3 21 21 F 1.35104 * 120.11489 * 0.02562 * 20 2 1 22 22 H 1.09000 * 109.46983 * 90.00598 * 1 2 3 23 23 H 1.09006 * 109.47443 * 210.00026 * 1 2 3 24 24 H 1.08994 * 109.47420 * 330.00222 * 1 2 3 25 25 H 1.08000 * 119.82950 * 359.94791 * 3 2 1 26 26 H 1.08002 * 119.88557 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.05798 * 179.74163 * 5 4 3 28 28 H 1.08999 * 109.47050 * 299.99837 * 10 9 7 29 29 H 1.09002 * 109.47229 * 60.00222 * 10 9 7 30 30 H 1.08999 * 109.46568 * 300.00190 * 11 10 9 31 31 H 1.08994 * 109.46976 * 59.99720 * 11 10 9 32 32 H 0.96996 * 120.00273 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1980 0.0000 4 6 3.5812 1.2079 0.0005 5 6 4.2838 0.0216 -0.0043 6 6 3.5962 -1.1942 0.0011 7 6 4.3416 -2.4678 0.0017 8 8 3.7403 -3.5235 0.0018 9 8 5.6888 -2.4598 0.0022 10 6 6.3556 -3.7497 0.0022 11 6 7.8713 -3.5404 0.0022 12 6 8.5633 -4.8790 0.0028 13 1 7.9804 -5.7883 0.0028 14 6 9.9406 -4.9431 0.0024 15 7 10.6503 -3.8360 0.0019 16 14 10.7985 -6.6025 0.0024 17 1 9.7820 -7.6851 0.0037 18 1 11.6472 -6.7210 -1.2104 19 1 11.6480 -6.7205 1.2147 20 6 2.1970 -1.1982 0.0005 21 9 1.5226 -2.3689 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 1.6531 2.1311 -0.0009 26 1 4.1126 2.1482 0.0001 27 1 5.3637 0.0324 -0.0080 28 1 6.0657 -4.3086 0.8920 29 1 6.0664 -4.3083 -0.8880 30 1 8.1608 -2.9816 -0.8878 31 1 8.1608 -2.9816 0.8921 32 1 11.6192 -3.8810 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761283564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:39 Heat of formation + Delta-G solvation = -122.262433 kcal Electronic energy + Delta-G solvation = -17530.927477 eV Core-core repulsion = 14370.592231 eV Total energy + Delta-G solvation = -3160.335246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.96320 -40.11638 -38.83479 -36.05672 -33.47172 -33.14821 -31.11023 -30.16095 -27.29042 -25.48156 -24.05285 -21.99203 -21.18844 -20.49414 -17.74399 -17.38989 -16.72498 -16.32494 -16.17908 -15.70750 -15.51096 -14.94526 -14.51054 -13.91387 -13.65296 -13.35581 -13.30027 -12.94454 -12.63933 -12.36815 -12.09139 -11.94838 -11.48515 -11.25124 -11.04718 -10.77823 -10.69803 -10.24731 -9.66960 -9.64157 -9.29533 -9.21363 -8.86469 -8.45463 -6.11426 -4.15553 0.48281 0.93709 2.64168 3.01967 3.27490 3.34999 3.40424 3.50775 3.99395 4.36357 4.38497 4.58478 4.74377 4.92263 4.96885 5.25461 5.29054 5.33805 5.46831 5.65190 5.79912 5.92717 5.99077 6.08636 6.08748 6.10806 6.56331 6.62330 6.91214 7.54355 7.60779 7.85476 8.14045 8.23956 8.90106 9.48996 11.00171 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.048197 B = 0.003975 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.813725 B = 7043.217320 C = 7598.281793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.138 4.138 3 C -0.064 4.064 4 C -0.141 4.141 5 C -0.038 4.038 6 C -0.152 4.152 7 C 0.498 3.502 8 O -0.502 6.502 9 O -0.351 6.351 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.157 3.843 21 F -0.114 7.114 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.152 0.848 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.272 12.516 -0.026 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.082 4.082 4 C -0.159 4.159 5 C -0.056 4.056 6 C -0.154 4.154 7 C 0.342 3.658 8 O -0.392 6.392 9 O -0.267 6.267 10 C 0.004 3.996 11 C -0.012 4.012 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.137 3.863 21 F -0.092 7.092 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.170 0.830 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.248 12.176 -0.025 21.113 hybrid contribution 0.505 -1.223 -0.006 1.323 sum -16.743 10.953 -0.030 20.007 Atomic orbital electron populations 1.20717 0.89577 1.03542 1.03009 1.19878 0.97363 0.91428 1.05269 1.21161 0.94302 0.97001 0.95729 1.21227 0.94012 0.98579 1.02102 1.21535 1.01624 0.90108 0.92314 1.19398 0.91404 0.93417 1.11184 1.20803 0.82538 0.88525 0.73942 1.90858 1.70109 1.32853 1.45401 1.86554 1.18349 1.39010 1.82786 1.23704 0.95281 0.79513 1.01152 1.19183 0.84879 0.98271 0.98914 1.21018 0.91468 0.91854 1.52055 0.92164 1.24979 0.97389 0.96938 0.94847 1.69975 1.06209 1.26780 1.49896 0.86412 0.79538 0.83656 0.77698 1.19568 1.20817 1.20823 1.17557 0.88219 0.81706 0.98793 1.91578 1.79535 1.45385 1.92707 0.90663 0.90996 0.90745 0.84537 0.84363 0.83009 0.92142 0.92150 0.95283 0.95283 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.83 36.01 0.35 -0.51 16 2 C -0.14 -1.44 5.88 -104.61 -0.62 -2.05 16 3 C -0.06 -0.53 9.69 -39.51 -0.38 -0.91 16 4 C -0.14 -1.27 10.03 -39.64 -0.40 -1.67 16 5 C -0.04 -0.46 9.61 -39.17 -0.38 -0.84 16 6 C -0.15 -2.33 5.88 -104.93 -0.62 -2.94 16 7 C 0.50 9.61 7.89 34.54 0.27 9.89 16 8 O -0.50 -10.97 15.13 -19.26 -0.29 -11.27 16 9 O -0.35 -7.21 9.47 -40.57 -0.38 -7.60 16 10 C 0.08 1.73 5.41 37.16 0.20 1.93 16 11 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 13 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.16 2.22 7.23 -38.94 -0.28 1.94 16 21 F -0.11 -1.84 14.76 2.25 0.03 -1.80 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 24 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 26 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.15 1.80 7.61 -52.49 -0.40 1.40 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -32.23 291.08 -6.66 -38.89 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: -3.72 Total: -5.25 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.40 Total: -8.23 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.68 Total: -18.86 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.23 -6.66 -38.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761283564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.372 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds