Wall clock time and date at job start Sun Mar 29 2020 22:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38206 * 120.09220 * 2 1 4 4 F 1.35098 * 119.94615 * 359.97228 * 3 2 1 5 5 C 1.38554 * 120.09504 * 180.29713 * 3 2 1 6 6 C 1.38343 * 120.28087 * 359.67650 * 5 3 2 7 7 C 1.37933 * 120.17836 * 0.04042 * 6 5 3 8 8 C 1.39579 * 120.08837 * 179.71780 * 2 1 3 9 9 C 1.47732 * 120.13846 * 0.02562 * 8 2 1 10 10 O 1.21469 * 120.00174 * 353.51019 * 9 8 2 11 11 O 1.34713 * 119.99881 * 173.51416 * 9 8 2 12 12 C 1.45205 * 116.99773 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47327 * 29.99784 * 12 11 9 14 14 C 1.52995 * 109.46951 * 269.99590 * 12 11 9 15 15 C 1.50701 * 109.46937 * 149.99780 * 12 11 9 16 16 H 1.07994 * 120.00114 * 359.97438 * 15 12 11 17 17 C 1.37884 * 119.99776 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99724 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00065 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47024 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47298 * 119.99567 * 19 17 15 22 22 H 1.48496 * 109.46806 * 239.99904 * 19 17 15 23 23 H 1.08996 * 109.47545 * 263.70670 * 1 2 3 24 24 H 1.09000 * 109.46706 * 23.70734 * 1 2 3 25 25 H 1.08995 * 109.47178 * 143.70584 * 1 2 3 26 26 H 1.08003 * 119.85739 * 179.69555 * 5 3 2 27 27 H 1.08006 * 119.91151 * 180.02562 * 6 5 3 28 28 H 1.08005 * 120.04861 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47264 * 300.00233 * 14 12 11 30 30 H 1.09002 * 109.47264 * 60.00414 * 14 12 11 31 31 H 1.09002 * 109.47436 * 180.02562 * 14 12 11 32 32 H 0.97008 * 119.99660 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1958 0.0000 4 9 1.5253 2.3662 -0.0006 5 6 3.5855 1.1959 -0.0062 6 6 4.2831 0.0012 -0.0057 7 6 3.6032 -1.1988 0.0002 8 6 2.2068 -1.2077 0.0059 9 6 1.4732 -2.4900 0.0117 10 8 0.2643 -2.4976 0.1302 11 8 2.1449 -3.6508 -0.1144 12 6 1.3593 -4.8719 -0.1009 13 1 0.3692 -4.6715 -0.5106 14 6 1.2238 -5.3753 1.3375 15 6 2.0462 -5.9204 -0.9375 16 1 2.9796 -5.6919 -1.4303 17 6 1.4830 -7.1716 -1.0736 18 7 0.3466 -7.4500 -0.4731 19 14 2.3347 -8.4716 -2.1099 20 1 3.5891 -7.9114 -2.6738 21 1 2.6546 -9.6485 -1.2629 22 1 1.4374 -8.8879 -3.2174 23 1 -0.3634 -0.1126 1.0214 24 1 -0.3633 0.9410 -0.4132 25 1 -0.3633 -0.8282 -0.6083 26 1 4.1231 2.1326 -0.0112 27 1 5.3632 0.0083 -0.0102 28 1 4.1499 -2.1303 0.0010 29 1 2.2138 -5.5757 1.7471 30 1 0.7269 -4.6169 1.9426 31 1 0.6344 -6.2922 1.3476 32 1 -0.0495 -8.3304 -0.5686 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817716861.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:45 Heat of formation + Delta-G solvation = -113.397175 kcal Electronic energy + Delta-G solvation = -18099.274159 eV Core-core repulsion = 14939.323339 eV Total energy + Delta-G solvation = -3159.950820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.95567 -40.08222 -38.36638 -35.84232 -33.33686 -32.65089 -31.04319 -29.46020 -27.13628 -25.35693 -24.21584 -22.09729 -21.26318 -19.93296 -17.94123 -16.85289 -16.40799 -16.02517 -15.80644 -15.76385 -15.26360 -14.99578 -14.50670 -13.60272 -13.27451 -13.20031 -13.00554 -12.34348 -12.19698 -11.98590 -11.91997 -11.73983 -11.31453 -11.20175 -11.09532 -10.86233 -10.38244 -10.29827 -9.65242 -9.47883 -9.04279 -8.93278 -8.67866 -8.52489 -6.21859 -4.28861 0.69707 1.10769 2.90111 3.21715 3.27614 3.31888 3.45933 3.76379 4.21497 4.31976 4.67004 4.73477 4.95869 5.11207 5.12748 5.30840 5.61248 5.76818 5.88089 5.96824 6.03200 6.22464 6.24908 6.44978 6.61183 6.76172 6.85830 6.87416 7.11301 7.55555 7.68019 7.88200 8.09267 8.55051 8.82825 9.36714 10.85633 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.038077 B = 0.005074 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.180680 B = 5516.824781 C = 5917.437658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C 0.077 3.923 4 F -0.137 7.137 5 C -0.125 4.125 6 C -0.114 4.114 7 C -0.067 4.067 8 C -0.091 4.091 9 C 0.495 3.505 10 O -0.507 6.507 11 O -0.349 6.349 12 C 0.216 3.784 13 H 0.048 0.952 14 C -0.155 4.155 15 C -0.521 4.521 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.037 0.963 30 H 0.016 0.984 31 H 0.100 0.900 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 14.057 1.366 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.059 4.059 3 C 0.058 3.942 4 F -0.116 7.116 5 C -0.143 4.143 6 C -0.132 4.132 7 C -0.085 4.085 8 C -0.093 4.093 9 C 0.340 3.660 10 O -0.398 6.398 11 O -0.265 6.265 12 C 0.164 3.836 13 H 0.066 0.934 14 C -0.213 4.213 15 C -0.559 4.559 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.118 0.882 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.371 13.875 1.421 14.946 hybrid contribution 0.187 -0.526 -0.420 0.699 sum 5.558 13.349 1.000 14.494 Atomic orbital electron populations 1.21066 0.88963 1.03654 1.04248 1.20054 0.97923 0.90436 0.97446 1.17293 0.89949 0.80764 1.06177 1.91477 1.80442 1.45466 1.94191 1.21314 0.92051 1.00068 1.00917 1.20982 1.00520 0.91079 1.00650 1.21654 0.92921 0.99542 0.94424 1.19119 0.93636 0.90827 1.05685 1.20843 0.85888 0.85385 0.73908 1.90729 1.15146 1.88052 1.45892 1.86539 1.43451 1.15519 1.80995 1.20699 0.92000 0.76115 0.94814 0.93404 1.22170 1.00609 1.02346 0.96171 1.21051 1.08873 0.95685 1.30278 0.91204 1.24888 0.95001 0.98172 0.95898 1.69909 1.17751 1.22286 1.42689 0.86214 0.79479 0.80721 0.79697 1.19461 1.20696 1.20738 0.90150 0.92042 0.87939 0.84475 0.84322 0.83375 0.94377 0.96445 0.88160 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.60 36.01 0.31 -1.55 16 2 C -0.06 -0.88 5.92 -104.13 -0.62 -1.50 16 3 C 0.08 1.03 7.24 -39.48 -0.29 0.74 16 4 F -0.14 -1.81 16.37 2.25 0.04 -1.77 16 5 C -0.12 -1.35 10.02 -39.43 -0.39 -1.75 16 6 C -0.11 -1.23 10.03 -39.65 -0.40 -1.63 16 7 C -0.07 -0.93 9.61 -39.17 -0.38 -1.31 16 8 C -0.09 -1.53 5.87 -104.99 -0.62 -2.15 16 9 C 0.50 10.41 7.80 34.61 0.27 10.68 16 10 O -0.51 -11.55 12.61 -19.24 -0.24 -11.79 16 11 O -0.35 -8.13 9.13 -40.53 -0.37 -8.50 16 12 C 0.22 5.70 2.56 -27.88 -0.07 5.63 16 13 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 14 C -0.16 -3.88 9.33 37.16 0.35 -3.53 16 15 C -0.52 -14.37 8.90 -34.44 -0.31 -14.67 16 16 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 19 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.06 0.80 7.46 -51.93 -0.39 0.42 16 25 H 0.10 1.76 5.86 -51.93 -0.30 1.46 16 26 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 27 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.15 2.00 7.63 -52.48 -0.40 1.60 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 282.31 15.07 4.25 4.25 Total: -1.00 -29.38 282.31 -6.39 -35.77 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.44 Total: 0.02 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.23 Total: -9.44 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.61 Total: -20.29 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.38 -6.39 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817716861.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.625 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds