Wall clock time and date at job start Sun Mar 29 2020 22:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38206 * 120.09220 * 2 1 4 4 F 1.35098 * 119.94615 * 359.97228 * 3 2 1 5 5 C 1.38554 * 120.09504 * 180.29713 * 3 2 1 6 6 C 1.38343 * 120.28087 * 359.67650 * 5 3 2 7 7 C 1.37933 * 120.17836 * 0.04042 * 6 5 3 8 8 C 1.39579 * 120.08837 * 179.71780 * 2 1 3 9 9 C 1.47732 * 120.13846 * 0.02562 * 8 2 1 10 10 O 1.21469 * 120.00174 * 353.51019 * 9 8 2 11 11 O 1.34713 * 119.99881 * 173.51416 * 9 8 2 12 12 C 1.45205 * 116.99773 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47327 * 29.99784 * 12 11 9 14 14 C 1.52995 * 109.46951 * 269.99590 * 12 11 9 15 15 C 1.50701 * 109.46937 * 149.99780 * 12 11 9 16 16 H 1.07994 * 120.00114 * 359.97438 * 15 12 11 17 17 C 1.37884 * 119.99776 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99724 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00065 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47024 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47298 * 119.99567 * 19 17 15 22 22 H 1.48496 * 109.46806 * 239.99904 * 19 17 15 23 23 H 1.08996 * 109.47545 * 263.70670 * 1 2 3 24 24 H 1.09000 * 109.46706 * 23.70734 * 1 2 3 25 25 H 1.08995 * 109.47178 * 143.70584 * 1 2 3 26 26 H 1.08003 * 119.85739 * 179.69555 * 5 3 2 27 27 H 1.08006 * 119.91151 * 180.02562 * 6 5 3 28 28 H 1.08005 * 120.04861 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47264 * 300.00233 * 14 12 11 30 30 H 1.09002 * 109.47264 * 60.00414 * 14 12 11 31 31 H 1.09002 * 109.47436 * 180.02562 * 14 12 11 32 32 H 0.97008 * 119.99660 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1958 0.0000 4 9 1.5253 2.3662 -0.0006 5 6 3.5855 1.1959 -0.0062 6 6 4.2831 0.0012 -0.0057 7 6 3.6032 -1.1988 0.0002 8 6 2.2068 -1.2077 0.0059 9 6 1.4732 -2.4900 0.0117 10 8 0.2643 -2.4976 0.1302 11 8 2.1449 -3.6508 -0.1144 12 6 1.3593 -4.8719 -0.1009 13 1 0.3692 -4.6715 -0.5106 14 6 1.2238 -5.3753 1.3375 15 6 2.0462 -5.9204 -0.9375 16 1 2.9796 -5.6919 -1.4303 17 6 1.4830 -7.1716 -1.0736 18 7 0.3466 -7.4500 -0.4731 19 14 2.3347 -8.4716 -2.1099 20 1 3.5891 -7.9114 -2.6738 21 1 2.6546 -9.6485 -1.2629 22 1 1.4374 -8.8879 -3.2174 23 1 -0.3634 -0.1126 1.0214 24 1 -0.3633 0.9410 -0.4132 25 1 -0.3633 -0.8282 -0.6083 26 1 4.1231 2.1326 -0.0112 27 1 5.3632 0.0083 -0.0102 28 1 4.1499 -2.1303 0.0010 29 1 2.2138 -5.5757 1.7471 30 1 0.7269 -4.6169 1.9426 31 1 0.6344 -6.2922 1.3476 32 1 -0.0495 -8.3304 -0.5686 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817716861.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:45 Heat of formation + Delta-G solvation = -128.982840 kcal Electronic energy + Delta-G solvation = -18099.950004 eV Core-core repulsion = 14939.323339 eV Total energy + Delta-G solvation = -3160.626665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.97628 -41.60821 -39.68750 -37.62046 -35.36454 -33.78302 -32.38729 -31.30069 -28.29430 -27.46291 -25.56040 -23.57711 -22.56507 -21.61035 -19.38473 -18.65916 -17.94043 -17.40588 -16.99072 -16.90179 -16.76865 -16.53539 -16.22913 -14.96332 -14.59008 -14.56354 -14.32077 -14.06059 -13.83380 -13.52826 -13.15244 -13.03425 -12.98661 -12.88543 -12.80444 -12.42536 -12.31245 -12.11862 -11.61341 -11.15373 -10.95959 -10.60825 -10.12464 -9.72769 -8.29359 -6.46186 -0.45761 0.07404 1.42468 1.43401 1.50229 1.57171 1.86125 2.39987 2.55687 3.01792 3.19241 3.60687 3.64725 3.89364 3.92264 4.23204 4.47333 4.58779 4.60148 4.62625 4.77317 4.80476 4.88709 5.01205 5.09923 5.14199 5.23927 5.31869 5.48523 5.61048 5.75993 5.89441 6.04816 6.58470 6.89248 7.25338 8.78732 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.038077 B = 0.005074 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.180680 B = 5516.824781 C = 5917.437658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C 0.072 3.928 4 F -0.136 7.136 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.070 4.070 8 C -0.120 4.120 9 C 0.488 3.512 10 O -0.536 6.536 11 O -0.353 6.353 12 C 0.218 3.782 13 H 0.008 0.992 14 C -0.142 4.142 15 C -0.546 4.546 16 H 0.070 0.930 17 C 0.016 3.984 18 N -0.918 5.918 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.277 1.277 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.180 0.820 27 H 0.184 0.816 28 H 0.148 0.852 29 H 0.047 0.953 30 H 0.022 0.978 31 H 0.081 0.919 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 15.444 1.005 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.074 4.074 3 C 0.053 3.947 4 F -0.115 7.115 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.088 4.088 8 C -0.121 4.121 9 C 0.335 3.665 10 O -0.429 6.429 11 O -0.269 6.269 12 C 0.165 3.835 13 H 0.026 0.974 14 C -0.200 4.200 15 C -0.584 4.584 16 H 0.088 0.912 17 C -0.183 4.183 18 N -0.556 5.556 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.203 1.203 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.197 0.803 27 H 0.202 0.798 28 H 0.166 0.834 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.152 15.287 1.069 17.358 hybrid contribution -0.673 -0.813 -0.295 1.096 sum 7.479 14.475 0.774 16.311 Atomic orbital electron populations 1.20950 0.89749 1.03367 1.03509 1.20071 0.97740 0.91064 0.98514 1.17403 0.91000 0.79880 1.06417 1.91484 1.80703 1.45085 1.94209 1.21813 0.90789 1.01901 0.97360 1.21432 1.02516 0.89363 0.97921 1.21803 0.91530 1.01263 0.94190 1.18920 0.94844 0.88667 1.09673 1.21715 0.86025 0.86021 0.72745 1.90714 1.16525 1.88380 1.47273 1.86513 1.43069 1.15612 1.81745 1.20399 0.90484 0.77425 0.95166 0.97398 1.21989 1.00807 1.01505 0.95690 1.21315 1.09214 0.96584 1.31260 0.91219 1.25840 0.95513 1.00181 0.96815 1.70029 1.18962 1.23052 1.43510 0.85114 0.78524 0.77703 0.77940 1.18554 1.19654 1.20267 0.90644 0.90157 0.90812 0.80304 0.79839 0.83442 0.93347 0.95894 0.89995 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.60 71.24 0.61 -3.14 16 2 C -0.07 -2.21 5.92 -19.55 -0.12 -2.32 16 3 C 0.07 1.73 7.24 22.34 0.16 1.89 16 4 F -0.14 -3.24 16.37 44.97 0.74 -2.50 16 5 C -0.10 -1.69 10.02 22.37 0.22 -1.47 16 6 C -0.09 -1.60 10.03 22.22 0.22 -1.37 16 7 C -0.07 -1.79 9.61 22.54 0.22 -1.58 16 8 C -0.12 -4.03 5.87 -20.10 -0.12 -4.15 16 9 C 0.49 21.52 7.80 70.33 0.55 22.07 16 10 O -0.54 -26.17 12.61 19.94 0.25 -25.92 16 11 O -0.35 -17.11 9.13 -56.23 -0.51 -17.62 16 12 C 0.22 12.05 2.56 29.85 0.08 12.12 16 13 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 14 C -0.14 -7.36 9.33 71.98 0.67 -6.69 16 15 C -0.55 -30.81 8.90 25.60 0.23 -30.59 16 16 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 17 C 0.02 0.88 5.30 84.66 0.45 1.33 16 18 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 19 Si 0.98 42.47 29.54 68.60 2.03 44.50 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.08 2.12 7.46 -2.39 -0.02 2.10 16 25 H 0.07 2.74 5.86 -2.39 -0.01 2.72 16 26 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 27 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 28 H 0.15 3.79 7.63 -2.91 -0.02 3.77 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 4.54 6.07 -2.39 -0.01 4.53 16 32 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -66.53 282.31 7.06 -59.47 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.14 Total: 8.30 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 3.18 Total: -13.89 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.24 Total: -52.34 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.26 Total: -43.54 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.74 Total: -2.50 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -66.53 7.06 -59.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817716861.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.513 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds