Wall clock time and date at job start Sun Mar 29 2020 22:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38198 * 120.09007 * 2 1 4 4 F 1.35097 * 119.95511 * 359.97056 * 3 2 1 5 5 C 1.38563 * 120.09787 * 180.30210 * 3 2 1 6 6 C 1.38354 * 120.27743 * 359.66636 * 5 3 2 7 7 C 1.37938 * 120.17863 * 0.05353 * 6 5 3 8 8 C 1.39577 * 120.08950 * 179.71517 * 2 1 3 9 9 C 1.47736 * 120.14067 * 0.02562 * 8 2 1 10 10 O 1.21471 * 119.99758 * 353.50352 * 9 8 2 11 11 O 1.34709 * 120.00321 * 173.51388 * 9 8 2 12 12 C 1.45194 * 116.99882 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47489 * 329.99554 * 12 11 9 14 14 C 1.53000 * 109.47303 * 89.99849 * 12 11 9 15 15 C 1.50707 * 109.47101 * 209.99679 * 12 11 9 16 16 H 1.07997 * 119.99794 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00064 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99947 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 120.00315 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47271 * 89.99627 * 19 17 15 21 21 H 1.48505 * 109.47329 * 210.00026 * 19 17 15 22 22 H 1.48505 * 109.46685 * 329.99668 * 19 17 15 23 23 H 1.09003 * 109.46840 * 263.70541 * 1 2 3 24 24 H 1.09000 * 109.47176 * 23.70632 * 1 2 3 25 25 H 1.08993 * 109.46939 * 143.71344 * 1 2 3 26 26 H 1.07996 * 119.85885 * 179.69527 * 5 3 2 27 27 H 1.07993 * 119.91040 * 180.02562 * 6 5 3 28 28 H 1.07993 * 120.04954 * 179.97438 * 7 6 5 29 29 H 1.08992 * 109.47600 * 59.99703 * 14 12 11 30 30 H 1.09002 * 109.46940 * 299.99450 * 14 12 11 31 31 H 1.09003 * 109.47074 * 180.02562 * 14 12 11 32 32 H 0.96997 * 120.00045 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3662 -0.0006 5 6 3.5855 1.1959 -0.0063 6 6 4.2832 0.0012 -0.0057 7 6 3.6033 -1.1989 0.0001 8 6 2.2068 -1.2077 0.0060 9 6 1.4733 -2.4900 0.0118 10 8 0.2644 -2.4977 0.1304 11 8 2.1450 -3.6509 -0.1142 12 6 1.3595 -4.8719 -0.0995 13 1 0.4699 -4.7244 0.5129 14 6 0.9421 -5.2270 -1.5280 15 6 2.1852 -5.9936 0.4760 16 1 3.1991 -5.8074 0.7981 17 6 1.6463 -7.2574 0.5914 18 7 2.3671 -8.2363 1.0932 19 14 -0.1071 -7.5796 0.0336 20 1 -0.1059 -7.9806 -1.3962 21 1 -0.6948 -8.6699 0.8530 22 1 -0.9145 -6.3445 0.2007 23 1 -0.3633 -0.1127 1.0215 24 1 -0.3633 0.9409 -0.4132 25 1 -0.3633 -0.8283 -0.6082 26 1 4.1230 2.1326 -0.0113 27 1 5.3631 0.0083 -0.0102 28 1 4.1500 -2.1302 0.0002 29 1 1.8315 -5.3746 -2.1405 30 1 0.3448 -4.4158 -1.9443 31 1 0.3520 -6.1435 -1.5169 32 1 1.9881 -9.1255 1.1740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817716862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:47 Heat of formation + Delta-G solvation = -103.552902 kcal Electronic energy + Delta-G solvation = -18170.216540 eV Core-core repulsion = 15010.692600 eV Total energy + Delta-G solvation = -3159.523940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.01222 -40.24774 -38.51803 -36.07142 -33.29632 -32.73687 -31.27518 -30.33274 -27.23371 -25.33498 -24.34010 -22.21359 -21.35451 -20.06639 -18.13792 -16.89876 -16.69413 -16.05609 -15.89523 -15.83830 -15.58702 -15.28012 -14.52987 -13.65778 -13.45508 -13.28934 -13.01410 -12.72840 -12.46939 -12.28780 -12.03578 -11.89465 -11.85180 -11.62109 -11.29341 -10.93061 -10.27293 -9.88909 -9.84094 -9.57175 -9.18696 -9.11353 -8.74042 -8.72661 -6.26604 -4.29471 0.61148 1.04803 2.77089 3.15832 3.23451 3.28609 3.30458 3.65080 4.16691 4.23013 4.59996 4.66320 4.88338 5.02917 5.04647 5.18471 5.53800 5.65282 5.78980 5.86603 5.96596 6.09857 6.13109 6.17050 6.23801 6.31655 6.41181 6.55860 6.70332 6.97279 7.28172 7.44812 8.14715 8.49978 8.79461 9.30068 10.85409 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.039959 B = 0.005425 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.551584 B = 5159.876721 C = 5653.514528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C 0.077 3.923 4 F -0.137 7.137 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.065 4.065 8 C -0.094 4.094 9 C 0.497 3.503 10 O -0.508 6.508 11 O -0.334 6.334 12 C 0.192 3.808 13 H 0.048 0.952 14 C -0.170 4.170 15 C -0.526 4.526 16 H 0.088 0.912 17 C 0.081 3.919 18 N -0.887 5.887 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.262 1.262 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 16.784 -3.400 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C 0.058 3.942 4 F -0.115 7.115 5 C -0.141 4.141 6 C -0.131 4.131 7 C -0.083 4.083 8 C -0.095 4.095 9 C 0.342 3.658 10 O -0.400 6.400 11 O -0.249 6.249 12 C 0.138 3.862 13 H 0.065 0.935 14 C -0.228 4.228 15 C -0.564 4.564 16 H 0.106 0.894 17 C -0.123 4.123 18 N -0.524 5.524 19 Si 0.708 3.292 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.187 1.187 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.851 16.555 -3.314 16.905 hybrid contribution -1.039 -0.162 -0.288 1.090 sum -0.187 16.394 -3.601 16.786 Atomic orbital electron populations 1.21064 0.88991 1.03585 1.04286 1.20030 0.97872 0.90430 0.97469 1.17280 0.89956 0.80753 1.06189 1.91480 1.80435 1.45430 1.94185 1.21347 0.92045 1.00139 1.00574 1.21006 1.00640 0.91022 1.00464 1.21691 0.92848 0.99710 0.94074 1.19022 0.93643 0.90497 1.06329 1.20924 0.85890 0.85397 0.73610 1.90729 1.15166 1.87963 1.46115 1.86557 1.42363 1.14855 1.81154 1.20978 0.92533 0.78809 0.93851 0.93454 1.22532 1.00978 1.00014 0.99236 1.20760 1.01985 0.91282 1.42344 0.89428 1.24718 0.97650 0.95439 0.94470 1.69831 1.36868 1.01608 1.44093 0.86976 0.85246 0.78543 0.78452 1.19963 1.21637 1.18689 0.90064 0.91973 0.88115 0.84380 0.84179 0.83180 0.91699 0.94369 0.92453 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.60 36.01 0.31 -1.44 16 2 C -0.06 -0.83 5.92 -104.14 -0.62 -1.44 16 3 C 0.08 0.98 7.24 -39.48 -0.29 0.69 16 4 F -0.14 -1.72 16.37 2.25 0.04 -1.68 16 5 C -0.12 -1.27 10.02 -39.42 -0.39 -1.66 16 6 C -0.11 -1.17 10.03 -39.65 -0.40 -1.57 16 7 C -0.06 -0.86 9.61 -39.16 -0.38 -1.24 16 8 C -0.09 -1.49 5.87 -104.99 -0.62 -2.11 16 9 C 0.50 9.84 7.80 34.61 0.27 10.11 16 10 O -0.51 -10.81 12.61 -19.24 -0.24 -11.05 16 11 O -0.33 -7.40 9.13 -40.52 -0.37 -7.77 16 12 C 0.19 4.73 2.16 -27.88 -0.06 4.67 16 13 H 0.05 1.23 6.22 -51.93 -0.32 0.91 16 14 C -0.17 -3.80 9.03 37.16 0.34 -3.46 16 15 C -0.53 -14.76 9.48 -34.44 -0.33 -15.08 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 18 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 19 Si 0.88 21.32 24.37 -169.99 -4.14 17.17 16 20 H -0.27 -6.35 6.87 56.52 0.39 -5.96 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.06 0.76 7.46 -51.93 -0.39 0.37 16 25 H 0.10 1.60 5.86 -51.93 -0.30 1.29 16 26 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.15 1.98 7.62 -52.49 -0.40 1.58 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.30 3.27 -51.93 -0.17 1.13 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -30.26 275.50 -5.35 -35.61 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.30 Total: -0.57 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.26 Total: -10.35 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.77 Total: -25.52 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.61 Total: -18.81 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.26 -5.35 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817716862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.940 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds