Wall clock time and date at job start Sun Mar 29 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00077 * 179.97438 * 11 10 9 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 10 15 15 N 1.46504 * 115.54946 * 34.41147 * 14 12 11 16 16 C 1.34591 * 126.44038 * 310.29729 * 15 14 12 17 17 N 1.31069 * 106.67834 * 179.87701 * 16 15 14 18 18 N 1.28832 * 107.99124 * 0.38831 * 17 16 15 19 19 N 1.28738 * 109.40010 * 359.75584 * 18 17 16 20 20 C 1.53009 * 117.49762 * 248.74605 * 14 12 11 21 21 C 1.52999 * 117.50308 * 180.08746 * 14 12 11 22 22 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 24 24 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 25 25 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 26 26 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 27 27 H 1.08009 * 126.65690 * 0.02562 * 16 15 14 28 28 H 1.09000 * 117.49351 * 359.97438 * 20 14 12 29 29 H 1.08996 * 117.49868 * 145.01897 * 20 14 12 30 30 H 1.08998 * 117.50092 * 214.97817 * 21 14 12 31 31 H 1.09006 * 117.49461 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2502 -6.0453 0.0036 13 8 3.4569 -5.9821 0.0031 14 6 1.5661 -7.3880 0.0036 15 7 0.3079 -7.4561 -0.7438 16 6 -0.7299 -6.6053 -0.6412 17 7 -1.6445 -7.0245 -1.4813 18 7 -1.1953 -8.0825 -2.0632 19 7 -0.0158 -8.3463 -1.6198 20 6 1.6834 -8.2407 1.2687 21 6 2.4545 -8.6337 0.0061 22 1 -0.4851 0.8400 -0.0004 23 1 0.6240 -2.5576 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.8719 -3.6036 0.8927 26 1 2.8719 -3.6052 -0.8873 27 1 -0.7953 -5.7429 0.0058 28 1 2.2557 -7.8305 2.1007 29 1 0.8246 -8.8525 1.5446 30 1 2.1028 -9.5039 -0.5480 31 1 3.5340 -8.4819 0.0074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849995636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:07 Heat of formation + Delta-G solvation = 41.498358 kcal Electronic energy + Delta-G solvation = -18094.144536 eV Core-core repulsion = 14993.123203 eV Total energy + Delta-G solvation = -3101.021333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.36105 -41.97331 -39.14273 -37.74328 -35.49330 -34.83489 -33.48255 -32.39855 -28.01028 -26.60087 -25.24509 -24.58077 -23.58395 -22.94495 -21.84320 -20.16564 -18.63184 -18.30258 -17.90689 -17.55482 -17.34603 -16.72299 -16.51819 -15.46639 -15.16399 -14.63024 -14.41403 -14.39242 -13.54682 -13.31174 -13.17960 -13.10302 -12.83093 -12.68378 -12.62807 -12.52083 -12.34569 -12.04314 -11.75272 -11.63729 -11.58969 -11.43140 -11.25647 -10.62591 -8.28174 -6.40848 -0.01667 0.38059 0.87248 1.05689 1.24903 1.41162 1.43278 1.55191 2.12050 2.38030 2.85623 3.07489 3.11556 3.33926 3.41625 3.55649 4.12482 4.16077 4.18046 4.31127 4.44172 4.46326 4.64697 4.69291 4.87489 5.02553 5.08204 5.40468 5.45365 5.70441 6.04222 6.33246 6.73347 7.29509 7.39611 8.84139 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.005049 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.127776 B = 5544.500943 C = 6281.274479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.030 3.970 10 C 0.093 3.907 11 O -0.357 6.357 12 C 0.498 3.502 13 O -0.501 6.501 14 C 0.035 3.965 15 N -0.273 5.273 16 C 0.196 3.804 17 N -0.332 5.332 18 N -0.098 5.098 19 N -0.092 5.092 20 C -0.099 4.099 21 C -0.099 4.099 22 H 0.267 0.733 23 H 0.004 0.996 24 H 0.016 0.984 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.255 0.745 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -16.307 4.770 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.084 0.916 9 C -0.008 4.008 10 C 0.020 3.980 11 O -0.273 6.273 12 C 0.339 3.661 13 O -0.388 6.388 14 C -0.051 4.051 15 N -0.075 5.075 16 C -0.102 4.102 17 N -0.179 5.179 18 N -0.092 5.092 19 N -0.079 5.079 20 C -0.137 4.137 21 C -0.136 4.136 22 H 0.076 0.924 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.271 0.729 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.241 -16.980 3.767 17.902 hybrid contribution 0.528 1.946 0.343 2.045 sum 4.769 -15.034 4.110 16.299 Atomic orbital electron populations 1.70080 1.07728 1.28196 1.50391 1.25890 0.95750 1.03233 0.94172 0.85343 0.79036 0.78464 0.77889 1.18526 1.20522 1.20064 1.21386 0.93741 0.91176 1.52376 0.91600 1.19003 0.94375 0.90323 0.97058 1.23338 0.95105 0.77818 1.01698 1.86443 1.42562 1.15794 1.82507 1.22022 0.85801 0.85399 0.72861 1.90714 1.14943 1.87389 1.45766 1.20992 0.85722 0.91614 1.06792 1.47788 1.14153 1.18615 1.26925 1.28269 0.82799 0.98953 1.00227 1.75046 1.26086 1.07508 1.09302 1.78598 1.01892 1.09449 1.19270 1.78764 1.11292 1.14188 1.03620 1.24046 1.03796 0.95612 0.90252 1.23867 0.99920 0.91035 0.98823 0.92380 0.97745 0.96569 0.90697 0.92240 0.72886 0.83420 0.84124 0.84228 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 13.29 21.45 0.28 -53.15 16 2 C 0.01 0.48 5.46 84.65 0.46 0.95 16 3 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -29.29 9.11 25.60 0.23 -29.06 16 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.45 5.35 29.85 0.16 1.61 16 10 C 0.09 3.63 5.40 71.98 0.39 4.02 16 11 O -0.36 -11.81 8.44 -51.35 -0.43 -12.25 16 12 C 0.50 13.91 7.61 71.23 0.54 14.45 16 13 O -0.50 -15.62 16.01 21.94 0.35 -15.26 16 14 C 0.04 0.72 2.99 2.86 0.01 0.73 16 15 N -0.27 -6.89 3.59 -314.91 -1.13 -8.02 16 16 C 0.20 5.36 11.77 180.27 2.12 7.48 16 17 N -0.33 -10.80 12.36 -60.30 -0.74 -11.55 16 18 N -0.10 -3.21 13.43 37.01 0.50 -2.71 16 19 N -0.09 -2.61 12.76 37.02 0.47 -2.14 16 20 C -0.10 -1.06 10.16 30.62 0.31 -0.75 16 21 C -0.10 -1.29 9.68 30.62 0.30 -0.99 16 22 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 23 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 2.79 8.13 -2.39 -0.02 2.77 16 26 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 27 H 0.26 5.97 7.36 -2.91 -0.02 5.95 16 28 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.14 1.58 7.90 -2.39 -0.02 1.56 16 31 H 0.14 1.68 7.67 -2.38 -0.02 1.66 16 Total: -1.00 -67.35 286.09 7.00 -60.35 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.15 Total: 2.19 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.52 Total: -1.56 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -0.62 Total: -77.57 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.08 Total: -27.51 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -67.35 7.00 -60.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849995636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.851 kcal (2) G-P(sol) polarization free energy of solvation -67.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds