Wall clock time and date at job start Sun Mar 29 2020 23:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34714 * 117.00197 * 270.00589 * 12 2 1 14 14 O 1.21466 * 119.99834 * 359.97438 * 13 12 2 15 15 C 1.47730 * 120.00196 * 180.02562 * 13 12 2 16 16 C 1.39628 * 120.14372 * 359.71558 * 15 13 12 17 17 C 1.37948 * 119.84394 * 179.74694 * 16 15 13 18 18 C 1.38368 * 120.14691 * 0.53626 * 17 16 15 19 19 C 1.50709 * 119.84503 * 179.76409 * 18 17 16 20 20 F 1.39891 * 109.46904 * 269.97590 * 19 18 17 21 21 C 1.38363 * 120.30393 * 359.73873 * 18 17 16 22 22 C 1.37942 * 120.15402 * 359.97438 * 21 18 17 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.07998 * 120.07958 * 0.02562 * 16 15 13 28 28 H 1.07999 * 119.92481 * 180.27834 * 17 16 15 29 29 H 1.08991 * 109.47222 * 29.98210 * 19 18 17 30 30 H 1.09000 * 109.46781 * 149.97917 * 19 18 17 31 31 H 1.08005 * 119.92507 * 179.97438 * 21 18 17 32 32 H 1.07997 * 120.08043 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0669 2.2851 14 8 1.9976 1.2610 2.2541 15 6 2.7101 -0.5614 3.5282 16 6 2.9595 -1.9347 3.5686 17 6 3.4241 -2.5141 4.7311 18 6 3.6324 -1.7394 5.8586 19 6 4.1350 -2.3804 7.1266 20 9 3.0474 -2.7989 7.9004 21 6 3.3817 -0.3791 5.8271 22 6 2.9225 0.2143 4.6695 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 2.7935 -2.5411 2.6905 28 1 3.6218 -3.5753 4.7625 29 1 4.7561 -3.2407 6.8773 30 1 4.7249 -1.6574 7.6900 31 1 3.5460 0.2197 6.7108 32 1 2.7277 1.2763 4.6461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850843721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:45 Heat of formation + Delta-G solvation = -139.695428 kcal Electronic energy + Delta-G solvation = -17606.462458 eV Core-core repulsion = 14445.371261 eV Total energy + Delta-G solvation = -3161.091198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.56710 -41.51516 -39.86538 -37.60844 -35.37817 -33.57089 -32.14200 -31.61651 -28.11260 -27.47871 -24.62635 -23.73624 -22.81626 -21.39940 -19.29312 -18.57881 -17.89826 -17.17968 -16.97314 -16.84871 -16.70685 -16.47600 -15.55951 -15.43426 -14.99376 -14.49824 -14.35774 -14.23878 -13.85463 -13.59880 -13.19948 -13.02291 -12.83587 -12.42919 -12.31456 -12.19248 -12.11916 -11.81565 -11.64607 -11.49703 -11.04531 -10.62361 -10.11723 -10.06457 -8.30685 -6.48340 -0.45485 0.30589 1.41152 1.45589 1.49247 1.53736 1.90123 2.39780 2.67077 3.00112 3.43337 3.68665 3.80962 3.91604 4.14359 4.15167 4.34404 4.47114 4.52214 4.65602 4.73830 4.76874 4.83970 4.96748 5.03891 5.19230 5.29835 5.36624 5.44727 5.57250 5.77083 5.85104 6.00907 6.55614 6.85661 7.23072 8.77220 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041358 B = 0.004304 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.847763 B = 6504.172826 C = 6884.373652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.986 3.014 9 H -0.277 1.277 10 H -0.268 1.268 11 H -0.262 1.262 12 O -0.354 6.354 13 C 0.488 3.512 14 O -0.552 6.552 15 C -0.133 4.133 16 C -0.072 4.072 17 C -0.105 4.105 18 C -0.105 4.105 19 C 0.104 3.896 20 F -0.227 7.227 21 C -0.104 4.104 22 C -0.071 4.071 23 H 0.021 0.979 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.272 0.728 27 H 0.138 0.862 28 H 0.165 0.835 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.166 0.834 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 -7.737 17.442 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.809 3.191 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.187 1.187 12 O -0.271 6.271 13 C 0.335 3.665 14 O -0.445 6.445 15 C -0.135 4.135 16 C -0.090 4.090 17 C -0.123 4.123 18 C -0.106 4.106 19 C 0.049 3.951 20 F -0.208 7.208 21 C -0.121 4.121 22 C -0.089 4.089 23 H 0.040 0.960 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.156 0.844 28 H 0.182 0.818 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.184 0.816 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.149 -7.290 17.265 20.058 hybrid contribution -0.279 0.395 -1.231 1.322 sum 6.870 -6.895 16.034 18.757 Atomic orbital electron populations 1.21995 0.96682 1.00506 1.00821 1.20418 0.92110 0.92167 0.78970 0.97478 1.21255 1.33675 1.14075 0.89760 0.91211 1.25869 0.94612 0.95642 1.02203 1.70016 1.36459 1.23668 1.25389 0.85189 0.78791 0.78630 0.76534 1.20187 1.19252 1.18691 1.86519 1.76138 1.43186 1.21210 1.21994 0.74070 0.85095 0.85375 1.90726 1.50650 1.17767 1.85344 1.19415 1.06981 0.95848 0.91206 1.21634 0.94854 0.92703 0.99801 1.21395 0.98108 1.01690 0.91093 1.20905 0.98627 0.94311 0.96735 1.21124 0.85337 1.01829 0.86769 1.92792 1.59133 1.92108 1.76757 1.21325 0.98192 0.94829 0.97785 1.21388 0.95735 1.00496 0.91329 0.96010 0.89819 0.93391 0.91897 0.84416 0.81768 0.86827 0.86784 0.81619 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 9.33 71.98 0.67 -6.91 16 2 C 0.22 12.29 2.56 29.85 0.08 12.37 16 3 H 0.01 0.47 7.16 -2.38 -0.02 0.45 16 4 C -0.55 -31.67 8.90 25.60 0.23 -31.44 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 8 Si 0.99 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 12 O -0.35 -17.84 9.12 -56.24 -0.51 -18.36 16 13 C 0.49 22.37 7.87 70.33 0.55 22.92 16 14 O -0.55 -28.39 15.61 19.95 0.31 -28.07 16 15 C -0.13 -4.59 5.87 -20.10 -0.12 -4.71 16 16 C -0.07 -2.02 9.62 22.54 0.22 -1.81 16 17 C -0.11 -2.09 9.68 22.23 0.22 -1.87 16 18 C -0.11 -1.84 5.60 -19.80 -0.11 -1.95 16 19 C 0.10 1.11 7.67 71.24 0.55 1.65 16 20 F -0.23 -3.97 17.34 44.97 0.78 -3.19 16 21 C -0.10 -2.03 9.68 22.23 0.22 -1.81 16 22 C -0.07 -2.00 9.60 22.53 0.22 -1.78 16 23 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 4.73 6.07 -2.39 -0.01 4.72 16 25 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.14 4.00 7.61 -2.91 -0.02 3.97 16 28 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.11 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.11 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.13 3.81 7.65 -2.91 -0.02 3.79 16 Total: -1.00 -70.93 289.10 7.13 -63.80 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.13 Total: 7.89 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 3.16 Total: -13.97 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.24 Total: -53.02 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.20 Total: -46.43 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.93 7.13 -63.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.899 kcal (2) G-P(sol) polarization free energy of solvation -70.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds