Wall clock time and date at job start Sun Mar 29 2020 22:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00163 * 2 1 4 4 H 1.48499 * 109.46874 * 240.00028 * 3 2 1 5 5 H 1.48496 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47270 * 120.00014 * 3 2 1 7 7 C 1.37881 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99955 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47536 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99454 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.40095 * 120.00078 * 180.02562 * 13 11 10 15 15 C 1.34777 * 120.00077 * 179.97438 * 14 13 11 16 16 O 1.21569 * 119.99954 * 0.02562 * 15 14 13 17 17 C 1.47709 * 119.99914 * 179.97438 * 15 14 13 18 18 C 1.41500 * 126.51714 * 179.97438 * 17 15 14 19 19 C 1.35365 * 105.50387 * 180.02562 * 18 17 15 20 20 N 1.35033 * 107.23063 * 359.97438 * 19 18 17 21 21 H 0.97000 * 124.88971 * 179.97438 * 20 19 18 22 22 N 1.28474 * 110.22757 * 0.02562 * 20 19 18 23 23 H 0.96998 * 119.99908 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47165 * 60.00424 * 9 7 2 25 25 H 1.08993 * 109.47362 * 300.00171 * 9 7 2 26 26 H 1.09004 * 109.47057 * 59.99902 * 10 9 7 27 27 H 1.09009 * 109.47000 * 300.00732 * 10 9 7 28 28 H 0.97004 * 119.99822 * 359.97438 * 13 11 10 29 29 H 0.97004 * 120.00100 * 359.97438 * 14 13 11 30 30 H 1.08001 * 127.24942 * 0.02562 * 18 17 15 31 31 H 1.08004 * 126.38789 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0020 12 8 0.2789 -4.9672 0.0030 13 7 2.1656 -6.1344 0.0024 14 7 1.4652 -7.3477 0.0023 15 6 2.1390 -8.5149 0.0022 16 8 3.3547 -8.5149 0.0027 17 6 1.4005 -9.7941 0.0028 18 6 1.9643 -11.0919 0.0022 19 6 0.9121 -11.9435 0.0024 20 7 -0.2102 -11.1927 0.0037 21 1 -1.1138 -11.5454 0.0037 22 7 0.0909 -9.9437 0.0036 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8919 26 1 2.8726 -3.6040 0.8909 27 1 2.8713 -3.6047 -0.8891 28 1 3.1357 -6.1344 0.0020 29 1 0.4951 -7.3477 0.0024 30 1 3.0133 -11.3489 0.0017 31 1 0.9611 -13.0225 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855356154.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:33 Heat of formation + Delta-G solvation = 28.152294 kcal Electronic energy + Delta-G solvation = -17190.698267 eV Core-core repulsion = 14089.098205 eV Total energy + Delta-G solvation = -3101.600062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.97760 -40.00384 -38.57357 -35.17285 -33.50711 -32.55394 -31.57826 -31.08345 -30.06962 -25.86274 -24.26786 -22.16937 -21.80328 -21.04139 -19.67088 -18.87034 -17.54801 -17.48678 -16.45707 -16.12029 -15.43114 -15.25904 -14.51713 -14.42695 -14.39129 -14.04072 -13.60468 -13.37475 -12.56869 -12.21728 -11.33448 -11.21636 -11.10524 -10.89876 -10.65748 -10.52422 -9.99780 -9.83459 -9.75874 -9.57775 -9.37881 -9.12330 -8.34048 -8.17026 -5.97164 -4.01841 1.24602 1.78348 1.94249 2.55796 2.95728 3.28687 3.35486 3.40051 3.41899 3.93775 4.34938 4.47124 4.54813 4.89022 5.25573 5.36042 5.38064 5.46021 5.97204 6.14820 6.15696 6.54701 6.71127 6.80753 6.93682 7.44574 7.71886 7.76639 7.81570 7.97844 8.04385 8.35971 8.67310 9.05847 9.61869 11.13750 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.066960 B = 0.003295 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.058657 B = 8494.420349 C = 8892.033545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.118 4.118 11 C 0.512 3.488 12 O -0.531 6.531 13 N -0.535 5.535 14 N -0.508 5.508 15 C 0.601 3.399 16 O -0.537 6.537 17 C -0.005 4.005 18 C -0.174 4.174 19 C -0.015 4.015 20 N -0.380 5.380 21 H 0.448 0.552 22 N -0.255 5.255 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.429 0.571 29 H 0.436 0.564 30 H 0.166 0.834 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -24.627 0.003 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.404 6.404 13 N -0.287 5.287 14 N -0.254 5.254 15 C 0.385 3.615 16 O -0.412 6.412 17 C -0.167 4.167 18 C -0.203 4.203 19 C -0.159 4.159 20 N -0.094 5.094 21 H 0.293 0.707 22 N -0.093 5.093 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.271 0.729 29 H 0.279 0.721 30 H 0.183 0.817 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.859 -23.838 0.005 23.854 hybrid contribution 0.643 0.080 -0.002 0.648 sum 1.502 -23.758 0.004 23.806 Atomic orbital electron populations 1.69983 1.06078 1.26784 1.49972 1.25019 0.94838 0.99270 0.95209 0.86623 0.79517 0.83026 0.78597 1.20207 1.21309 1.20204 1.21159 0.93000 0.90822 1.51734 0.92445 1.18938 0.93115 0.89059 0.98895 1.21907 1.00901 0.89763 1.03397 1.22129 0.89167 0.83944 0.74666 1.90700 1.14169 1.86847 1.48715 1.45578 1.08931 0.95614 1.78537 1.44676 1.09545 0.97199 1.73947 1.16813 0.86484 0.80703 0.77499 1.90812 1.12308 1.86501 1.51532 1.21613 0.89694 0.94530 1.10880 1.21794 1.00785 0.89942 1.07747 1.22991 0.85831 0.99391 1.07686 1.43384 1.10064 1.03146 1.52828 0.70709 1.73621 1.16411 1.00731 1.18487 0.92847 0.95587 0.95582 0.89399 0.89404 0.72876 0.72073 0.81650 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.12 -2.34 5.64 -27.88 -0.16 -2.50 16 11 C 0.51 9.88 7.95 -10.99 -0.09 9.79 16 12 O -0.53 -12.22 15.82 5.56 0.09 -12.13 16 13 N -0.53 -8.54 6.26 31.22 0.20 -8.34 16 14 N -0.51 -7.73 6.26 30.50 0.19 -7.54 16 15 C 0.60 8.72 7.94 -12.39 -0.10 8.62 16 16 O -0.54 -8.80 16.76 5.30 0.09 -8.71 16 17 C 0.00 -0.06 7.13 -82.77 -0.59 -0.65 16 18 C -0.17 -1.58 10.81 -39.36 -0.43 -2.00 16 19 C -0.01 -0.08 12.02 -17.17 -0.21 -0.29 16 20 N -0.38 -2.45 6.83 30.47 0.21 -2.24 16 21 H 0.45 1.16 8.96 -190.44 -1.71 -0.55 16 22 N -0.26 -2.73 11.92 33.42 0.40 -2.33 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 27 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 28 H 0.43 6.00 8.00 -182.60 -1.46 4.54 16 29 H 0.44 6.64 7.73 -182.60 -1.41 5.23 16 30 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.19 0.25 8.06 -52.48 -0.42 -0.18 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -36.61 287.65 -7.53 -44.14 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.65 Total: 2.46 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.09 Total: 0.31 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 1.73 Total: -46.95 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.18 Total: -20.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.61 -7.53 -44.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855356154.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.289 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds