Wall clock time and date at job start Sun Mar 29 2020 23:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38192 * 120.84171 * 2 1 4 4 C 1.38716 * 119.28868 * 179.79982 * 3 2 1 5 5 F 1.35100 * 119.49274 * 180.23396 * 4 3 2 6 6 N 1.32174 * 121.01296 * 0.48257 * 4 3 2 7 7 C 1.31663 * 121.84258 * 359.74569 * 6 4 3 8 8 C 1.39554 * 120.59581 * 0.02562 * 7 6 4 9 9 C 1.47725 * 120.53270 * 179.97438 * 8 7 6 10 10 O 1.21566 * 120.00078 * 130.56879 * 9 8 7 11 11 N 1.34772 * 120.00224 * 310.57671 * 9 8 7 12 12 C 1.46511 * 119.99874 * 4.63964 * 11 9 8 13 13 C 1.46497 * 120.00184 * 184.64102 * 11 9 8 14 14 C 1.50699 * 109.47208 * 89.99632 * 13 11 9 15 15 H 1.07995 * 120.00244 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99700 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99751 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47052 * 60.00348 * 18 16 14 20 20 H 1.48504 * 109.46913 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47100 * 300.00024 * 18 16 14 22 22 H 1.08995 * 109.47739 * 264.37579 * 1 2 3 23 23 H 1.09002 * 109.47093 * 144.36813 * 1 2 3 24 24 H 1.09002 * 109.47013 * 24.37466 * 1 2 3 25 25 H 1.08003 * 120.35876 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.70084 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47234 * 84.88310 * 12 11 9 28 28 H 1.09000 * 109.46611 * 204.88355 * 12 11 9 29 29 H 1.08998 * 109.46716 * 324.87746 * 12 11 9 30 30 H 1.09004 * 109.47079 * 210.00029 * 13 11 9 31 31 H 1.09000 * 109.47059 * 329.99255 * 13 11 9 32 32 H 0.96997 * 119.99766 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1865 0.0000 4 6 3.6021 1.1489 0.0042 5 9 4.2988 2.3064 0.0090 6 7 4.2522 -0.0019 -0.0013 7 6 3.6200 -1.1568 -0.0060 8 6 2.2252 -1.2031 -0.0059 9 6 1.5173 -2.4997 -0.0118 10 8 0.6253 -2.7088 0.7872 11 7 1.8605 -3.4508 -0.9028 12 6 3.0012 -3.2390 -1.7975 13 6 1.0929 -4.6964 -0.9768 14 6 -0.0341 -4.5341 -1.9639 15 1 -0.1653 -3.5970 -2.4845 16 6 -0.8972 -5.5824 -2.2032 17 7 -0.7372 -6.7237 -1.5697 18 14 -2.2938 -5.3814 -3.4274 19 1 -1.7364 -5.0628 -4.7665 20 1 -3.0719 -6.6441 -3.5022 21 1 -3.1838 -4.2776 -2.9862 22 1 -0.3634 -0.1007 1.0226 23 1 -0.3633 -0.8353 -0.5987 24 1 -0.3633 0.9361 -0.4241 25 1 1.6951 2.1329 -0.0004 26 1 4.1859 -2.0766 -0.0109 27 1 3.9206 -3.5288 -1.2888 28 1 2.8761 -3.8447 -2.6951 29 1 3.0552 -2.1861 -2.0742 30 1 1.7459 -5.5068 -1.3008 31 1 0.6841 -4.9302 0.0063 32 1 -1.3441 -7.4613 -1.7384 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864995810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:57 Heat of formation + Delta-G solvation = -40.648271 kcal Electronic energy + Delta-G solvation = -18257.285369 eV Core-core repulsion = 15132.781929 eV Total energy + Delta-G solvation = -3124.503440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.13875 -40.61613 -38.45583 -35.13716 -33.94401 -32.78909 -31.14552 -28.33985 -27.59628 -26.12474 -24.36309 -23.03069 -22.04469 -19.21588 -17.65548 -17.62366 -16.80089 -16.58863 -16.19178 -15.42343 -14.83105 -14.55048 -14.39763 -13.80232 -13.76017 -13.58888 -12.88525 -12.71591 -12.65574 -12.27142 -12.21270 -11.94516 -11.83286 -11.27351 -10.98747 -10.64602 -10.26117 -10.00900 -9.74642 -9.71242 -9.20988 -8.95109 -8.50348 -7.80020 -6.11785 -4.17524 0.60793 0.96772 3.07081 3.26976 3.31968 3.33510 3.40287 3.50226 3.84542 4.30766 4.37765 4.54910 4.72103 4.87911 5.21651 5.25299 5.36763 5.48027 5.58398 5.62985 5.72503 5.79065 6.04513 6.12431 6.25360 6.46338 6.93265 7.32291 7.39609 7.45404 7.83360 8.13163 8.21490 8.74284 8.90730 9.47841 10.96242 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.005542 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.690589 B = 5051.559356 C = 5349.234661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.033 3.967 3 C -0.202 4.202 4 C 0.315 3.685 5 F -0.114 7.114 6 N -0.521 5.521 7 C 0.166 3.834 8 C -0.180 4.180 9 C 0.554 3.446 10 O -0.527 6.527 11 N -0.591 5.591 12 C 0.078 3.922 13 C 0.244 3.756 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.174 0.826 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 12.817 0.864 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.025 3.975 3 C -0.223 4.223 4 C 0.162 3.838 5 F -0.093 7.093 6 N -0.235 5.235 7 C 0.009 3.991 8 C -0.186 4.186 9 C 0.339 3.661 10 O -0.404 6.404 11 N -0.322 5.322 12 C -0.066 4.066 13 C 0.126 3.874 14 C -0.570 4.570 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.169 0.831 26 H 0.191 0.809 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.314 12.541 1.287 14.575 hybrid contribution -1.328 0.300 -0.792 1.575 sum 5.986 12.841 0.495 14.176 Atomic orbital electron populations 1.20937 0.88514 1.03666 1.04519 1.20274 0.97686 0.90314 0.89273 1.21630 0.92452 1.00289 1.07924 1.18277 0.86803 0.81737 0.96986 1.91615 1.80214 1.44286 1.93144 1.67006 1.41819 0.97717 1.16997 1.22849 0.90532 0.94596 0.91153 1.21268 0.95270 0.95785 1.06230 1.17756 0.83353 0.82854 0.82149 1.90781 1.30844 1.79782 1.38995 1.48134 1.30577 1.19374 1.34157 1.21835 0.88346 1.01329 0.95140 1.19391 0.90468 0.78695 0.98892 1.21361 1.12704 0.98997 1.23957 0.92475 1.24926 0.97653 0.95041 0.96308 1.69916 1.38180 1.03156 1.41858 0.86556 0.82043 0.77509 0.81303 1.20214 1.21098 1.20153 0.89053 0.89457 0.90988 0.83124 0.80887 0.93249 0.90097 0.92586 0.94583 0.93421 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.00 36.00 0.32 -1.30 16 2 C 0.03 0.46 5.94 -103.94 -0.62 -0.15 16 3 C -0.20 -2.43 9.75 -39.42 -0.38 -2.81 16 4 C 0.31 4.21 8.41 -17.23 -0.14 4.06 16 5 F -0.11 -1.45 17.29 2.25 0.04 -1.42 16 6 N -0.52 -7.49 10.36 -13.22 -0.14 -7.63 16 7 C 0.17 2.33 8.98 -17.13 -0.15 2.18 16 8 C -0.18 -2.87 4.89 -104.83 -0.51 -3.38 16 9 C 0.55 11.08 6.41 -12.39 -0.08 11.00 16 10 O -0.53 -12.49 15.50 5.31 0.08 -12.41 16 11 N -0.59 -11.95 2.86 -184.12 -0.53 -12.48 16 12 C 0.08 1.18 9.08 59.85 0.54 1.72 16 13 C 0.24 6.10 5.17 -5.20 -0.03 6.07 16 14 C -0.53 -14.43 9.39 -34.44 -0.32 -14.75 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 18 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.09 1.43 7.20 -51.93 -0.37 1.06 16 24 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 25 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 26 H 0.17 2.08 6.35 -52.49 -0.33 1.75 16 27 H 0.05 0.61 7.10 -51.93 -0.37 0.24 16 28 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 29 H 0.06 0.77 6.29 -51.93 -0.33 0.44 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 283.41 15.07 4.27 4.27 Total: -1.00 -31.17 283.41 -5.46 -36.63 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.43 Total: -2.38 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.47 Total: 4.29 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.07 Total: -45.08 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.17 -5.46 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864995810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.018 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds