Wall clock time and date at job start Sun Mar 29 2020 23:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99636 * 2 1 4 4 H 1.48500 * 109.47235 * 269.99938 * 3 2 1 5 5 H 1.48496 * 109.47330 * 30.00075 * 3 2 1 6 6 H 1.48505 * 109.47081 * 150.00462 * 3 2 1 7 7 C 1.37872 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00160 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47603 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47286 * 180.02562 * 10 9 7 12 12 O 1.21271 * 120.00047 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99534 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99779 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47292 * 179.97438 * 14 13 11 16 16 C 1.38752 * 120.77250 * 269.97714 * 15 14 13 17 17 C 1.38108 * 119.21991 * 180.02562 * 16 15 14 18 18 N 1.31925 * 120.80242 * 0.02562 * 17 16 15 19 19 C 1.32038 * 121.68882 * 359.68313 * 18 17 16 20 20 F 1.35096 * 119.64981 * 180.28646 * 19 18 17 21 21 C 1.38507 * 120.77580 * 90.00161 * 15 14 13 22 22 H 0.97004 * 120.00579 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47254 * 59.99700 * 9 7 2 24 24 H 1.09004 * 109.46895 * 300.00077 * 9 7 2 25 25 H 1.09003 * 109.47119 * 59.99545 * 10 9 7 26 26 H 1.09004 * 109.46999 * 299.99941 * 10 9 7 27 27 H 0.96999 * 120.00804 * 359.97438 * 13 11 10 28 28 H 1.08999 * 109.46825 * 59.99729 * 14 13 11 29 29 H 1.09004 * 109.46957 * 299.99905 * 14 13 11 30 30 H 1.07995 * 120.38911 * 359.97438 * 16 15 14 31 31 H 1.08003 * 119.59612 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.42704 * 359.94978 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1342 -0.0008 14 6 1.4335 -7.4031 -0.0008 15 6 2.4128 -8.5484 -0.0009 16 6 2.8737 -9.0882 -1.1932 17 6 3.7705 -10.1379 -1.1559 18 7 4.1891 -10.6282 -0.0049 19 6 3.7770 -10.1369 1.1493 20 9 4.2368 -10.6670 2.3037 21 6 2.8734 -9.0872 1.1890 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8720 -3.6042 -0.8906 27 1 3.1359 -6.1343 -0.0004 28 1 0.8071 -7.4609 -0.8910 29 1 0.8066 -7.4607 0.8890 30 1 2.5346 -8.6928 -2.1391 31 1 4.1329 -10.5629 -2.0802 32 1 2.5360 -8.6913 2.1355 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871007261.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:24 Heat of formation + Delta-G solvation = -56.712831 kcal Electronic energy + Delta-G solvation = -17058.261853 eV Core-core repulsion = 13933.061802 eV Total energy + Delta-G solvation = -3125.200051 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.32508 -40.61050 -39.13806 -35.46005 -33.49152 -32.67155 -31.29869 -30.97582 -27.51400 -25.35871 -24.07327 -22.59926 -21.50326 -19.83058 -18.01008 -17.70607 -16.89113 -16.53679 -16.39549 -15.69406 -15.68179 -15.23090 -14.73805 -14.43909 -14.08206 -13.51552 -13.30196 -13.20561 -12.82379 -12.50693 -12.19843 -11.96483 -11.20933 -10.95041 -10.63324 -10.43371 -10.13241 -10.00285 -9.71755 -9.43920 -9.23407 -9.06540 -8.97519 -8.34793 -5.98783 -4.03425 0.50289 0.55760 3.05548 3.13408 3.17799 3.31704 3.37944 3.40375 3.59153 3.97558 4.20470 4.45463 4.49751 4.55860 5.06323 5.07180 5.23094 5.36282 5.36323 5.42111 5.68394 5.83880 6.16686 6.17862 6.18243 6.50077 6.83295 7.20563 7.70434 7.73177 7.81850 8.03550 8.34808 8.65300 9.04896 9.60418 11.12109 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.043216 B = 0.003324 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.756288 B = 8422.732997 C = 8573.960438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.531 6.531 13 N -0.742 5.742 14 C 0.157 3.843 15 C -0.028 4.028 16 C -0.166 4.166 17 C 0.136 3.864 18 N -0.514 5.514 19 C 0.306 3.694 20 F -0.112 7.112 21 C -0.177 4.177 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.399 0.601 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 -19.928 -1.237 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.406 6.406 13 N -0.397 5.397 14 C 0.033 3.967 15 C -0.036 4.036 16 C -0.187 4.187 17 C -0.021 4.021 18 N -0.228 5.228 19 C 0.153 3.847 20 F -0.091 7.091 21 C -0.198 4.198 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.233 0.767 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.109 -20.495 -1.162 21.724 hybrid contribution 0.488 1.344 0.248 1.451 sum 7.597 -19.151 -0.914 20.623 Atomic orbital electron populations 1.69991 1.06064 1.26638 1.50119 1.25023 0.94830 0.99256 0.95260 0.86586 0.79778 0.83472 0.78081 1.20658 1.21209 1.19874 1.21212 0.92941 0.90988 1.51506 0.92586 1.18911 0.93168 0.89358 0.98670 1.21883 1.00764 0.91626 1.02638 1.21640 0.88671 0.85432 0.74215 1.90683 1.14431 1.87460 1.47990 1.46237 1.10152 1.04744 1.78567 1.20152 0.92110 0.80414 1.04023 1.20314 0.95358 0.95705 0.92261 1.22237 0.98997 0.98029 0.99403 1.22567 0.92628 0.92371 0.94490 1.67025 1.26794 1.30976 0.98049 1.18136 0.93189 0.91505 0.81885 1.91640 1.87427 1.85601 1.44431 1.21848 0.99433 0.97669 1.00890 0.92915 0.95777 0.95784 0.90108 0.90112 0.76704 0.89906 0.90094 0.83380 0.81267 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.50 5.64 -27.89 -0.16 -2.66 16 11 C 0.51 9.19 7.83 -10.99 -0.09 9.10 16 12 O -0.53 -11.87 15.98 5.56 0.09 -11.78 16 13 N -0.74 -9.28 5.55 -61.47 -0.34 -9.62 16 14 C 0.16 1.66 5.85 -5.19 -0.03 1.63 16 15 C -0.03 -0.24 5.28 -104.33 -0.55 -0.79 16 16 C -0.17 -1.20 9.81 -39.44 -0.39 -1.59 16 17 C 0.14 1.02 11.18 -17.56 -0.20 0.83 16 18 N -0.51 -5.36 10.37 -13.59 -0.14 -5.50 16 19 C 0.31 3.18 8.41 -17.34 -0.15 3.03 16 20 F -0.11 -1.24 17.29 2.25 0.04 -1.20 16 21 C -0.18 -1.58 9.79 -39.36 -0.39 -1.96 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.40 4.01 8.46 -40.82 -0.35 3.67 16 28 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -34.19 293.34 -6.37 -40.56 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.68 Total: -1.82 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.47 Total: -5.07 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.25 Total: -41.52 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.19 -6.37 -40.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871007261.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.150 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds