Wall clock time and date at job start Sun Mar 29 2020 23:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47533 * 270.00025 * 3 2 1 5 5 H 1.48503 * 109.47310 * 30.00429 * 3 2 1 6 6 H 1.48503 * 109.47014 * 149.99926 * 3 2 1 7 7 C 1.37874 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00263 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47640 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00266 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47288 * 180.02562 * 12 11 10 14 14 N 1.28333 * 124.90500 * 90.03776 * 13 12 11 15 15 C 1.33490 * 117.83473 * 179.97438 * 14 13 12 16 16 C 1.33869 * 113.18215 * 0.07307 * 15 14 13 17 17 S 1.70749 * 124.89958 * 269.99716 * 13 12 11 18 18 C 1.51713 * 110.89269 * 179.97438 * 16 15 14 19 19 C 1.54302 * 104.90746 * 342.75013 * 18 16 15 20 20 C 1.52615 * 137.15387 * 180.14367 * 15 14 13 21 21 H 0.97002 * 119.99699 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46915 * 60.00314 * 9 7 2 23 23 H 1.09008 * 109.46840 * 300.00738 * 9 7 2 24 24 H 1.00903 * 111.00037 * 56.03989 * 10 9 7 25 25 H 1.09003 * 109.47230 * 59.99732 * 11 10 9 26 26 H 1.08997 * 109.46864 * 299.99878 * 11 10 9 27 27 H 1.09003 * 109.47343 * 59.99734 * 12 11 10 28 28 H 1.09007 * 109.47013 * 299.99695 * 12 11 10 29 29 H 1.09002 * 110.37205 * 101.64055 * 18 16 15 30 30 H 1.08999 * 110.36965 * 223.86420 * 18 16 15 31 31 H 1.09005 * 110.97220 * 144.35405 * 19 18 16 32 32 H 1.08995 * 110.97428 * 268.12496 * 19 18 16 33 33 H 1.08997 * 110.32202 * 316.27309 * 20 15 14 34 34 H 1.09008 * 110.31487 * 78.46849 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5052 -4.9070 -0.0011 12 6 2.5301 -6.0430 -0.0005 13 6 1.8116 -7.3678 -0.0017 14 7 1.4633 -8.0132 -1.0548 15 6 0.8320 -9.1780 -0.8916 16 6 0.6518 -9.5042 0.3942 17 16 1.3445 -8.2271 1.3978 18 6 -0.0691 -10.8332 0.5193 19 6 -0.6996 -11.0750 -0.8681 20 6 0.2457 -10.2678 -1.7849 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8405 -3.5487 0.7808 25 1 0.8805 -4.9812 -0.8914 26 1 0.8800 -4.9817 0.8886 27 1 3.1544 -5.9687 0.8900 28 1 3.1556 -5.9685 -0.8901 29 1 0.6381 -11.6274 0.7584 30 1 -0.8444 -10.7738 1.2832 31 1 -0.6843 -12.1344 -1.1243 32 1 -1.7145 -10.6797 -0.9097 33 1 -0.3133 -9.8225 -2.6079 34 1 1.0386 -10.9100 -2.1684 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905570521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:49 Heat of formation + Delta-G solvation = 36.545273 kcal Electronic energy + Delta-G solvation = -15326.879357 eV Core-core repulsion = 12771.936457 eV Total energy + Delta-G solvation = -2554.942900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33834 -36.78126 -35.42013 -32.80489 -30.94931 -28.64544 -27.70213 -26.09005 -23.58175 -22.01427 -21.31396 -20.96133 -18.88174 -17.97239 -16.42588 -16.11682 -15.03197 -14.74236 -14.32262 -14.27993 -14.00672 -13.66063 -13.12721 -12.98462 -12.69670 -12.26524 -11.99326 -11.84229 -11.49419 -11.31526 -11.20907 -11.07403 -10.83632 -10.66069 -10.59015 -9.94575 -9.45911 -9.24094 -9.17153 -8.53675 -8.47521 -7.34496 -6.02614 -4.04855 0.73309 1.21022 1.80423 2.74382 3.33383 3.38878 3.42574 3.66913 4.29045 4.42479 4.51961 4.66899 4.89822 5.17481 5.29920 5.33183 5.33547 5.37641 5.42396 5.50632 5.57591 5.65748 5.81218 5.83316 5.87119 6.18672 6.32382 6.41284 7.23681 7.40620 7.77355 7.77858 8.11668 8.36351 8.58668 9.04122 9.60004 11.08589 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051872 B = 0.003421 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.658049 B = 8182.566391 C = 8293.172469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.688 5.688 11 C 0.068 3.932 12 C -0.043 4.043 13 C 0.079 3.921 14 N -0.467 5.467 15 C 0.047 3.953 16 C -0.263 4.263 17 S 0.128 5.872 18 C -0.036 4.036 19 C -0.116 4.116 20 C -0.040 4.040 21 H 0.262 0.738 22 H 0.029 0.971 23 H -0.013 1.013 24 H 0.329 0.671 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -23.053 1.965 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.319 5.319 11 C -0.063 4.063 12 C -0.085 4.085 13 C -0.201 4.201 14 N -0.180 5.180 15 C -0.084 4.084 16 C -0.384 4.384 17 S 0.385 5.615 18 C -0.076 4.076 19 C -0.155 4.155 20 C -0.080 4.080 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.005 0.995 24 H 0.145 0.855 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.467 -22.465 1.869 22.547 hybrid contribution -0.237 0.507 0.226 0.603 sum 0.231 -21.957 2.094 22.058 Atomic orbital electron populations 1.69969 1.06112 1.26819 1.50840 1.25003 0.94892 0.99425 0.95319 0.86460 0.79650 0.82900 0.78153 1.20584 1.21311 1.19812 1.21181 0.93557 0.90163 1.50436 0.91853 1.19566 0.90567 0.87194 0.95923 1.60641 1.21363 1.00978 1.48910 1.21822 0.94597 0.89418 1.00488 1.20380 0.97518 0.85909 1.04672 1.26918 1.02019 1.01414 0.89754 1.65407 1.13690 1.06731 1.32180 1.21648 0.99852 0.92870 0.94020 1.26973 1.10734 1.03576 0.97109 1.83771 1.53060 1.12685 1.11954 1.20609 0.98076 0.90394 0.98481 1.22402 0.99073 1.00541 0.93502 1.20883 0.98154 0.92266 0.96704 0.92888 0.95312 0.99486 0.85465 0.91113 0.96162 0.89794 0.87822 0.90007 0.90544 0.89588 0.90339 0.89956 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.20 5.44 -4.98 -0.03 5.17 16 10 N -0.69 -14.97 6.49 -115.06 -0.75 -15.72 16 11 C 0.07 1.26 5.67 -3.83 -0.02 1.24 16 12 C -0.04 -0.65 6.05 -27.88 -0.17 -0.82 16 13 C 0.08 1.19 6.62 -13.74 -0.09 1.10 16 14 N -0.47 -7.55 10.54 -7.23 -0.08 -7.63 16 15 C 0.05 0.64 7.70 -82.45 -0.63 0.00 16 16 C -0.26 -3.20 7.42 -35.34 -0.26 -3.47 16 17 S 0.13 1.62 23.18 -107.50 -2.49 -0.87 16 18 C -0.04 -0.30 6.79 -26.70 -0.18 -0.48 16 19 C -0.12 -0.81 7.14 -25.29 -0.18 -0.99 16 20 C -0.04 -0.38 6.81 -26.16 -0.18 -0.56 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 23 H -0.01 -0.36 8.14 -51.92 -0.42 -0.78 16 24 H 0.33 6.61 8.72 -39.29 -0.34 6.27 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 LS Contribution 301.33 15.07 4.54 4.54 Total: -1.00 -32.24 301.33 -10.18 -42.43 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.96 Total: -0.74 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.16 Total: -12.40 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.09 Total: -49.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.49 Total: -0.87 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.24 -10.18 -42.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905570521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.971 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds