Wall clock time and date at job start Sun Mar 29 2020 23:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21322 * 119.99523 * 2 1 4 4 C 1.46600 * 119.99888 * 180.02562 * 2 1 3 5 5 C 1.40282 * 120.24850 * 270.92618 * 4 2 1 6 6 F 1.35101 * 120.09726 * 0.02562 * 5 4 2 7 7 C 1.38046 * 119.80599 * 179.97438 * 5 4 2 8 8 C 1.38464 * 120.31088 * 0.02562 * 7 5 4 9 9 C 1.38149 * 120.50427 * 359.97438 * 8 7 5 10 10 C 1.38603 * 120.18413 * 0.02562 * 9 8 7 11 11 O 1.35603 * 120.15235 * 180.27417 * 10 9 8 12 12 C 1.42901 * 117.00415 * 359.71976 * 11 10 9 13 13 C 1.53000 * 109.47094 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46867 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99807 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00044 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99850 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47311 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.47104 * 120.00048 * 18 16 14 21 21 H 1.48501 * 109.47363 * 239.99830 * 18 16 14 22 22 H 1.09003 * 109.46678 * 264.98337 * 1 2 3 23 23 H 1.08999 * 109.47480 * 24.98395 * 1 2 3 24 24 H 1.09000 * 109.47188 * 144.98506 * 1 2 3 25 25 H 1.08007 * 119.84367 * 180.02562 * 7 5 4 26 26 H 1.08001 * 119.75109 * 180.02562 * 8 7 5 27 27 H 1.08000 * 119.91109 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.47205 * 300.00149 * 12 11 10 29 29 H 1.09000 * 109.46854 * 60.00372 * 12 11 10 30 30 H 1.08998 * 109.47163 * 300.00109 * 13 12 11 31 31 H 1.08992 * 109.47160 * 60.00127 * 13 12 11 32 32 H 0.97003 * 119.99928 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2400 -1.2696 -0.0006 5 6 2.5764 -1.8919 1.2108 6 9 2.2253 -1.3233 2.3850 7 6 3.2663 -3.0876 1.1996 8 6 3.6278 -3.6746 -0.0012 9 6 3.3032 -3.0729 -1.2017 10 6 2.6109 -1.8722 -1.2146 11 8 2.2877 -1.2849 -2.3933 12 6 2.6976 -1.9561 -3.5865 13 6 2.2477 -1.1489 -4.8059 14 6 2.6795 -1.8570 -6.0641 15 1 3.2210 -2.7892 -6.0005 16 6 2.3841 -1.3141 -7.2966 17 7 1.7251 -0.1786 -7.3742 18 14 2.9199 -2.1915 -8.8563 19 1 3.6396 -3.4405 -8.4994 20 1 1.7247 -2.5253 -9.6720 21 1 3.8209 -1.3065 -9.6375 22 1 -0.3633 -0.0899 1.0238 23 1 -0.3634 0.9315 -0.4340 24 1 -0.3633 -0.8417 -0.5897 25 1 3.5252 -3.5675 2.1319 26 1 4.1671 -4.6103 0.0006 27 1 3.5896 -3.5393 -2.1327 28 1 3.7834 -2.0516 -3.5949 29 1 2.2454 -2.9473 -3.6195 30 1 1.1620 -1.0530 -4.7977 31 1 2.7003 -0.1579 -4.7727 32 1 1.5170 0.2031 -8.2413 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918989976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:03 Heat of formation + Delta-G solvation = -106.581808 kcal Electronic energy + Delta-G solvation = -17806.193594 eV Core-core repulsion = 14646.538311 eV Total energy + Delta-G solvation = -3159.655283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.09771 -40.27040 -38.67557 -37.10460 -33.48956 -31.89742 -30.52524 -29.72664 -29.13293 -25.26363 -23.93585 -22.56686 -21.03068 -20.02611 -18.31114 -16.87560 -16.60448 -16.47620 -16.04989 -15.69963 -15.38782 -14.89001 -14.69415 -14.65907 -14.36011 -14.07398 -12.78211 -12.69127 -12.46987 -12.37522 -12.18114 -11.92060 -11.74441 -11.50751 -11.00792 -10.97421 -10.68110 -10.03776 -9.81057 -9.68007 -9.37503 -8.94009 -8.52115 -8.23877 -6.16551 -4.22149 0.88939 1.21875 1.94715 3.22685 3.25298 3.31563 3.36353 3.42716 4.00820 4.25269 4.36774 4.73955 4.87948 5.03626 5.15497 5.20165 5.23921 5.43397 5.50287 5.70244 5.81526 5.85682 5.89703 6.02893 6.13922 6.21299 6.50611 6.60650 7.33715 7.49806 7.53259 7.63120 7.86517 8.14146 8.83372 9.42862 10.94924 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031683 B = 0.004827 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.533034 B = 5798.794059 C = 6509.096553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.420 3.580 3 O -0.442 6.442 4 C -0.237 4.237 5 C 0.163 3.837 6 F -0.133 7.133 7 C -0.204 4.204 8 C -0.036 4.036 9 C -0.221 4.221 10 C 0.204 3.796 11 O -0.306 6.306 12 C 0.063 3.937 13 C 0.025 3.975 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.888 5.888 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -6.942 15.676 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.294 3.706 3 O -0.314 6.314 4 C -0.240 4.240 5 C 0.143 3.857 6 F -0.111 7.111 7 C -0.223 4.223 8 C -0.054 4.054 9 C -0.240 4.240 10 C 0.155 3.845 11 O -0.218 6.218 12 C -0.011 4.011 13 C -0.013 4.013 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.156 0.844 26 H 0.155 0.845 27 H 0.162 0.838 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.166 -6.027 15.518 16.648 hybrid contribution 0.309 -0.641 -0.785 1.059 sum 0.474 -6.668 14.733 16.179 Atomic orbital electron populations 1.22227 0.93021 1.05560 1.04293 1.22074 0.91844 0.86837 0.69833 1.90571 1.72383 1.34048 1.34434 1.19631 1.11704 1.01427 0.91215 1.17214 0.97069 0.92179 0.79244 1.91507 1.89954 1.84585 1.45063 1.20842 1.05255 0.96220 0.99968 1.20890 0.95230 0.98591 0.90714 1.21417 1.05421 0.96935 1.00253 1.18780 0.90077 0.89984 0.85649 1.86144 1.73379 1.49723 1.12547 1.23534 0.99006 0.97016 0.81517 1.19156 0.98069 0.95919 0.88112 1.20961 1.37525 1.08056 0.90115 0.92218 1.24991 0.94860 0.94929 0.99344 1.69983 1.39196 1.18313 1.25043 0.86420 0.78456 0.79621 0.82815 1.19614 1.20794 1.20790 0.88664 0.89132 0.89120 0.84405 0.84512 0.83809 0.92499 0.92412 0.95252 0.95235 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 10.22 36.01 0.37 -2.04 16 2 C 0.42 6.93 5.85 -30.93 -0.18 6.75 16 3 O -0.44 -8.77 17.86 5.52 0.10 -8.67 16 4 C -0.24 -3.74 5.56 -104.90 -0.58 -4.33 16 5 C 0.16 2.21 7.29 -38.88 -0.28 1.93 16 6 F -0.13 -1.79 16.84 2.25 0.04 -1.75 16 7 C -0.20 -2.27 10.00 -39.57 -0.40 -2.66 16 8 C -0.04 -0.39 10.02 -39.53 -0.40 -0.79 16 9 C -0.22 -2.99 9.03 -39.48 -0.36 -3.35 16 10 C 0.20 3.37 6.71 -38.59 -0.26 3.11 16 11 O -0.31 -5.99 9.59 -18.50 -0.18 -6.17 16 12 C 0.06 1.25 4.68 37.16 0.17 1.43 16 13 C 0.02 0.62 5.34 -27.88 -0.15 0.47 16 14 C -0.53 -14.24 9.11 -34.44 -0.31 -14.56 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 26 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.14 1.82 6.29 -52.49 -0.33 1.49 16 28 H 0.06 1.07 7.67 -51.93 -0.40 0.68 16 29 H 0.06 1.05 7.65 -51.93 -0.40 0.65 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -31.15 292.18 -6.02 -37.18 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -3.63 Total: -3.08 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.47 Total: -12.43 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.08 Total: -14.83 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.15 -6.02 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918989976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.406 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds