Wall clock time and date at job start Sun Mar 29 2020 23:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50698 * 109.46984 * 294.99719 * 4 2 1 6 6 C 1.38243 * 119.97426 * 269.72925 * 5 4 2 7 7 C 1.38200 * 120.02427 * 179.72801 * 6 5 4 8 8 C 1.38466 * 119.97325 * 0.56580 * 7 6 5 9 9 F 1.35104 * 120.02389 * 179.68550 * 8 7 6 10 10 C 1.38451 * 119.94952 * 359.70618 * 8 7 6 11 11 C 1.38203 * 119.97336 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 O 1.21211 * 120.00271 * 240.00146 * 12 2 1 14 14 O 1.34314 * 119.99869 * 59.99755 * 12 2 1 15 15 C 1.34921 * 116.99712 * 180.02562 * 14 12 2 16 16 H 1.07999 * 120.00437 * 359.97438 * 15 14 12 17 17 C 1.38758 * 119.99789 * 180.02562 * 15 14 12 18 18 N 1.31435 * 120.00019 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46959 * 59.99466 * 19 17 15 21 21 H 1.48502 * 109.47181 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47035 * 299.99666 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 27 27 H 1.09001 * 109.46952 * 174.99972 * 4 2 1 28 28 H 1.08005 * 119.99314 * 359.97438 * 6 5 4 29 29 H 1.08006 * 120.01383 * 180.25779 * 7 6 5 30 30 H 1.07995 * 120.01661 * 180.02562 * 10 8 7 31 31 H 1.07997 * 119.99031 * 179.97438 * 11 10 8 32 32 H 0.96995 * 119.99843 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 6 2.4844 1.0289 2.9821 7 6 2.1174 1.7472 4.1043 8 6 0.9099 1.4848 4.7292 9 9 0.5529 2.1820 5.8300 10 6 0.0689 0.5073 4.2253 11 6 0.4356 -0.2059 3.0997 12 6 2.0323 -0.7104 -1.2305 13 8 2.7291 -1.6959 -1.1194 14 8 1.7078 -0.2514 -2.4504 15 6 2.1897 -0.9340 -3.5097 16 1 2.8068 -1.8066 -3.3546 17 6 1.8934 -0.5141 -4.7986 18 7 1.1428 0.5482 -4.9875 19 14 2.5613 -1.4586 -6.2654 20 1 2.0652 -2.8577 -6.2207 21 1 2.1035 -0.8114 -7.5211 22 1 4.0456 -1.4580 -6.2202 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 1.6054 -1.7198 1.2951 27 1 3.1263 -0.7995 1.2055 28 1 3.4286 1.2299 2.4976 29 1 2.7743 2.5094 4.4967 30 1 -0.8733 0.3021 4.7115 31 1 -0.2201 -0.9687 2.7066 32 1 0.9354 0.8415 -5.8885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921107587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:32 Heat of formation + Delta-G solvation = -135.534300 kcal Electronic energy + Delta-G solvation = -17649.900366 eV Core-core repulsion = 14488.989609 eV Total energy + Delta-G solvation = -3160.910758 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85769 -41.23969 -40.12642 -37.48139 -35.75853 -34.27869 -32.09435 -31.56785 -27.66774 -27.54851 -24.88973 -23.89056 -22.48807 -20.88830 -19.85279 -18.62331 -18.46830 -17.34914 -16.96153 -16.58687 -16.52211 -16.28893 -16.08714 -15.14503 -14.94156 -14.71070 -14.41016 -14.24946 -13.81540 -13.63189 -13.15230 -13.02423 -12.98740 -12.38048 -12.35958 -12.25924 -12.15327 -12.07780 -11.86989 -11.80457 -10.90487 -10.68544 -10.01271 -9.50203 -8.52704 -6.32636 0.15356 0.31430 1.32896 1.34628 1.50318 1.66813 2.11989 2.56328 2.83387 2.98561 3.32738 3.77315 3.87963 3.90960 4.02577 4.03706 4.27535 4.38742 4.39736 4.69665 4.81287 4.86018 4.91875 5.03632 5.07322 5.19056 5.19339 5.20534 5.28982 5.35048 5.63881 5.84453 5.95944 6.68702 6.92573 7.79664 8.67619 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.055566 B = 0.003968 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.781470 B = 7054.203584 C = 7159.115656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 H 0.106 0.894 4 C -0.053 4.053 5 C -0.089 4.089 6 C -0.091 4.091 7 C -0.152 4.152 8 C 0.075 3.925 9 F -0.149 7.149 10 C -0.151 4.151 11 C -0.086 4.086 12 C 0.398 3.602 13 O -0.583 6.583 14 O -0.242 6.242 15 C -0.424 4.424 16 H 0.081 0.919 17 C -0.003 4.003 18 N -0.902 5.902 19 Si 1.015 2.985 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.262 1.262 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 1.815 15.956 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 H 0.124 0.876 4 C -0.090 4.090 5 C -0.089 4.089 6 C -0.109 4.109 7 C -0.171 4.171 8 C 0.056 3.944 9 F -0.128 7.128 10 C -0.169 4.169 11 C -0.104 4.104 12 C 0.246 3.754 13 O -0.481 6.481 14 O -0.150 6.150 15 C -0.499 4.499 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.540 5.540 19 Si 0.834 3.166 20 H -0.186 1.186 21 H -0.184 1.184 22 H -0.187 1.187 23 H 0.078 0.922 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.698 1.734 15.847 16.031 hybrid contribution 0.326 -0.212 -0.586 0.703 sum -1.372 1.522 15.261 15.397 Atomic orbital electron populations 1.21775 0.91419 1.02796 1.03327 1.20847 0.98876 1.00183 0.88029 0.87569 1.20308 1.01767 0.98087 0.88847 1.19858 0.95399 0.97341 0.96340 1.21144 1.00256 0.94386 0.95147 1.21313 0.96172 1.02343 0.97256 1.17959 0.95913 0.94602 0.85934 1.91473 1.92102 1.77911 1.51304 1.21337 1.01079 0.96462 0.98048 1.21167 0.95740 0.99337 0.94112 1.24499 0.79978 0.84352 0.86585 1.90510 1.40438 1.29195 1.87935 1.83905 1.64607 1.52490 1.14009 1.21381 1.33396 1.11741 0.83426 0.90166 1.26497 0.96020 0.97323 1.00477 1.70064 1.35596 1.24242 1.24049 0.84725 0.78838 0.77929 0.75131 1.18633 1.18424 1.18650 0.92215 0.88592 0.93159 0.90284 0.90754 0.83898 0.83174 0.82873 0.83335 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.69 71.98 0.63 -3.53 16 2 C -0.06 -2.09 2.82 -11.54 -0.03 -2.12 16 3 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 4 C -0.05 -1.50 4.19 29.85 0.13 -1.38 16 5 C -0.09 -2.03 4.71 -19.86 -0.09 -2.12 16 6 C -0.09 -1.90 9.70 22.26 0.22 -1.69 16 7 C -0.15 -2.96 10.03 22.32 0.22 -2.74 16 8 C 0.07 1.55 7.30 22.37 0.16 1.71 16 9 F -0.15 -3.27 17.27 44.97 0.78 -2.49 16 10 C -0.15 -2.80 10.03 22.31 0.22 -2.57 16 11 C -0.09 -1.68 7.96 22.26 0.18 -1.50 16 12 C 0.40 19.64 7.20 71.24 0.51 20.15 16 13 O -0.58 -31.34 15.16 20.77 0.31 -31.03 16 14 O -0.24 -14.18 9.65 14.83 0.14 -14.03 16 15 C -0.42 -25.75 9.65 67.94 0.66 -25.10 16 16 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 17 C 0.00 -0.16 5.49 84.88 0.47 0.30 16 18 N -0.90 -53.28 13.67 21.63 0.30 -52.98 16 19 Si 1.01 43.37 29.55 68.60 2.03 45.40 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.10 2.26 6.27 -2.39 -0.01 2.25 16 25 H 0.05 1.77 8.11 -2.39 -0.02 1.75 16 26 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 27 H 0.07 2.25 7.90 -2.39 -0.02 2.23 16 28 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.15 2.45 8.04 -2.91 -0.02 2.43 16 32 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.10 288.40 7.95 -63.15 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.13 Total: 12.57 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 3.26 Total: -20.58 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.30 Total: -52.98 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: 0.46 Total: -45.06 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.10 7.95 -63.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921107587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.380 kcal (2) G-P(sol) polarization free energy of solvation -71.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds