Wall clock time and date at job start Sun Mar 29 2020 23:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48491 * 109.47300 * 270.00447 * 3 2 1 5 5 H 1.48496 * 109.46709 * 30.00515 * 3 2 1 6 6 H 1.48501 * 109.46967 * 150.00367 * 3 2 1 7 7 C 1.37876 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.47899 * 111.00157 * 69.88109 * 10 9 7 12 12 C 1.53990 * 107.06063 * 145.84000 * 11 10 9 13 13 C 1.54598 * 105.14070 * 358.77664 * 12 11 10 14 14 H 1.08992 * 110.72471 * 96.57848 * 13 12 11 15 15 C 1.53000 * 110.72189 * 219.68691 * 13 12 11 16 16 C 1.50703 * 109.46912 * 291.14350 * 15 13 12 17 17 N 1.29022 * 124.91561 * 90.00062 * 16 15 13 18 18 C 1.31786 * 117.12379 * 179.97438 * 17 16 15 19 19 C 1.33640 * 114.49989 * 359.97438 * 18 17 16 20 20 S 1.70981 * 124.91419 * 269.69854 * 16 15 13 21 21 C 1.48738 * 111.04167 * 187.45571 * 10 9 7 22 22 H 0.96999 * 119.99788 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46823 * 60.00795 * 9 7 2 24 24 H 1.08996 * 109.47351 * 300.00488 * 9 7 2 25 25 H 1.09003 * 109.91628 * 26.48304 * 11 10 9 26 26 H 1.09000 * 110.07934 * 265.28649 * 11 10 9 27 27 H 1.08998 * 110.30863 * 239.85857 * 12 11 10 28 28 H 1.09004 * 110.30613 * 117.69020 * 12 11 10 29 29 H 1.09002 * 109.47398 * 51.14428 * 15 13 12 30 30 H 1.09001 * 109.47194 * 171.14608 * 15 13 12 31 31 H 1.07995 * 122.74912 * 179.97438 * 18 17 16 32 32 H 1.08000 * 126.03631 * 179.97438 * 19 18 17 33 33 H 1.08992 * 110.84110 * 81.95966 * 21 10 9 34 34 H 1.09002 * 110.58277 * 318.77098 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9111 -3.7099 1.2960 12 6 3.1616 -5.2050 1.5664 13 6 2.5294 -5.9442 0.3647 14 1 3.2841 -6.1736 -0.3874 15 6 1.8215 -7.2199 0.8254 16 6 2.8458 -8.2225 1.2912 17 7 3.2832 -8.3236 2.5008 18 6 4.1811 -9.2584 2.7388 19 6 4.5195 -9.9866 1.6706 20 16 3.5909 -9.3952 0.2948 21 6 1.5066 -4.9161 -0.1807 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.2915 -3.2881 2.0873 26 1 3.8609 -3.1776 1.2447 27 1 2.6770 -5.5080 2.4945 28 1 4.2318 -5.4067 1.6141 29 1 1.1447 -6.9837 1.6465 30 1 1.2532 -7.6400 -0.0045 31 1 4.6084 -9.4225 3.7170 32 1 5.2338 -10.7965 1.6541 33 1 1.2988 -5.1020 -1.2343 34 1 0.5870 -4.9410 0.4040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934337191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:57 Heat of formation + Delta-G solvation = 41.414426 kcal Electronic energy + Delta-G solvation = -15939.493441 eV Core-core repulsion = 13384.761683 eV Total energy + Delta-G solvation = -2554.731758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83634 -38.24852 -34.02109 -32.41798 -30.27048 -28.96274 -27.34760 -25.74682 -23.66492 -22.38666 -20.15440 -20.05547 -19.74387 -17.90874 -16.18268 -15.90599 -15.37267 -15.13943 -14.50598 -14.02748 -13.82721 -13.55071 -13.16559 -12.76485 -12.50070 -11.96562 -11.72431 -11.64068 -11.57286 -10.98143 -10.69926 -10.61606 -10.44092 -10.40636 -10.05819 -9.82068 -9.67766 -9.49950 -9.16880 -8.95516 -8.40029 -7.29169 -6.00033 -4.01044 0.59804 1.24806 1.63817 2.74442 3.34520 3.40052 3.44339 4.04669 4.45609 4.76028 4.89066 5.00272 5.06560 5.29640 5.32909 5.35274 5.45240 5.63782 5.70653 5.78826 5.95237 6.02524 6.16031 6.32195 6.36375 6.54334 6.71735 6.76692 7.22461 7.34371 7.65808 7.82166 8.04905 8.22166 8.55068 9.07042 9.63280 11.11083 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.056156 B = 0.003957 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.487256 B = 7073.834048 C = 7252.169931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.184 3.816 10 N -0.516 5.516 11 C 0.050 3.950 12 C -0.121 4.121 13 C -0.084 4.084 14 H 0.080 0.920 15 C -0.040 4.040 16 C 0.071 3.929 17 N -0.475 5.475 18 C 0.041 3.959 19 C -0.270 4.270 20 S 0.111 5.889 21 C 0.041 3.959 22 H 0.261 0.739 23 H 0.030 0.970 24 H -0.007 1.007 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.074 0.926 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.227 -19.968 2.249 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.059 3.941 10 N -0.240 5.240 11 C -0.078 4.078 12 C -0.159 4.159 13 C -0.105 4.105 14 H 0.098 0.902 15 C -0.081 4.081 16 C -0.207 4.207 17 N -0.189 5.189 18 C -0.110 4.110 19 C -0.409 4.409 20 S 0.365 5.635 21 C -0.088 4.088 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.011 0.989 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.192 0.808 33 H 0.092 0.908 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.154 -19.642 1.186 20.618 hybrid contribution 0.313 0.604 1.574 1.715 sum 6.467 -19.038 2.760 20.295 Atomic orbital electron populations 1.69957 1.06058 1.26730 1.51234 1.24991 0.94866 0.99316 0.95490 0.86495 0.79720 0.83082 0.78112 1.20628 1.21333 1.19864 1.21150 0.93531 0.89940 1.49783 0.91967 1.19894 0.90225 0.87848 0.96162 1.64828 1.27324 1.02004 1.29873 1.22648 0.99599 0.93881 0.91710 1.22478 1.00285 0.95701 0.97465 1.22083 0.97996 0.92437 0.97988 0.90184 1.20434 0.93951 0.91961 1.01784 1.27224 1.01908 1.00177 0.91436 1.66306 1.12518 1.20702 1.19352 1.21834 0.96199 0.92635 1.00314 1.27029 1.09352 1.08892 0.95668 1.84058 1.35682 1.28838 1.14967 1.23203 0.94920 0.90411 1.00226 0.92960 0.95213 0.98874 0.94040 0.91356 0.91441 0.92325 0.88600 0.89437 0.80968 0.80849 0.90771 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.53 8.82 -34.44 -0.30 -14.83 16 8 H 0.06 1.78 7.78 -52.49 -0.41 1.37 16 9 C 0.18 4.90 4.53 -4.97 -0.02 4.87 16 10 N -0.52 -11.39 5.25 -231.72 -1.22 -12.60 16 11 C 0.05 1.01 6.15 -2.76 -0.02 0.99 16 12 C -0.12 -1.96 6.14 -25.38 -0.16 -2.11 16 13 C -0.08 -1.23 3.05 -88.76 -0.27 -1.50 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.04 -0.48 5.20 -27.88 -0.15 -0.63 16 16 C 0.07 0.86 6.27 -13.46 -0.08 0.77 16 17 N -0.47 -6.23 10.54 -11.86 -0.13 -6.36 16 18 C 0.04 0.44 11.35 -19.18 -0.22 0.22 16 19 C -0.27 -2.46 11.37 29.12 0.33 -2.13 16 20 S 0.11 1.10 23.18 -107.50 -2.49 -1.39 16 21 C 0.04 0.72 6.01 -1.78 -0.01 0.71 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 24 H -0.01 -0.18 7.81 -51.93 -0.41 -0.59 16 25 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.07 1.07 7.76 -51.93 -0.40 0.67 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.19 8.02 -51.93 -0.42 0.77 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.68 7.93 -51.93 -0.41 0.27 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -31.38 297.58 -9.58 -40.97 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.95 Total: -3.55 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.99 Total: -12.16 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.61 Total: -45.30 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.38 -9.58 -40.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934337191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.380 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds