Wall clock time and date at job start Sun Mar 29 2020 23:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48491 * 109.47300 * 270.00447 * 3 2 1 5 5 H 1.48496 * 109.46709 * 30.00515 * 3 2 1 6 6 H 1.48501 * 109.46967 * 150.00367 * 3 2 1 7 7 C 1.37876 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.47899 * 111.00157 * 69.88109 * 10 9 7 12 12 C 1.53990 * 107.06063 * 145.84000 * 11 10 9 13 13 C 1.54598 * 105.14070 * 358.77664 * 12 11 10 14 14 H 1.08992 * 110.72471 * 96.57848 * 13 12 11 15 15 C 1.53000 * 110.72189 * 219.68691 * 13 12 11 16 16 C 1.50703 * 109.46912 * 291.14350 * 15 13 12 17 17 N 1.29022 * 124.91561 * 90.00062 * 16 15 13 18 18 C 1.31786 * 117.12379 * 179.97438 * 17 16 15 19 19 C 1.33640 * 114.49989 * 359.97438 * 18 17 16 20 20 S 1.70981 * 124.91419 * 269.69854 * 16 15 13 21 21 C 1.48738 * 111.04167 * 187.45571 * 10 9 7 22 22 H 0.96999 * 119.99788 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46823 * 60.00795 * 9 7 2 24 24 H 1.08996 * 109.47351 * 300.00488 * 9 7 2 25 25 H 1.09003 * 109.91628 * 26.48304 * 11 10 9 26 26 H 1.09000 * 110.07934 * 265.28649 * 11 10 9 27 27 H 1.08998 * 110.30863 * 239.85857 * 12 11 10 28 28 H 1.09004 * 110.30613 * 117.69020 * 12 11 10 29 29 H 1.09002 * 109.47398 * 51.14428 * 15 13 12 30 30 H 1.09001 * 109.47194 * 171.14608 * 15 13 12 31 31 H 1.07995 * 122.74912 * 179.97438 * 18 17 16 32 32 H 1.08000 * 126.03631 * 179.97438 * 19 18 17 33 33 H 1.08992 * 110.84110 * 81.95966 * 21 10 9 34 34 H 1.09002 * 110.58277 * 318.77098 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9111 -3.7099 1.2960 12 6 3.1616 -5.2050 1.5664 13 6 2.5294 -5.9442 0.3647 14 1 3.2841 -6.1736 -0.3874 15 6 1.8215 -7.2199 0.8254 16 6 2.8458 -8.2225 1.2912 17 7 3.2832 -8.3236 2.5008 18 6 4.1811 -9.2584 2.7388 19 6 4.5195 -9.9866 1.6706 20 16 3.5909 -9.3952 0.2948 21 6 1.5066 -4.9161 -0.1807 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.2915 -3.2881 2.0873 26 1 3.8609 -3.1776 1.2447 27 1 2.6770 -5.5080 2.4945 28 1 4.2318 -5.4067 1.6141 29 1 1.1447 -6.9837 1.6465 30 1 1.2532 -7.6400 -0.0045 31 1 4.6084 -9.4225 3.7170 32 1 5.2338 -10.7965 1.6541 33 1 1.2988 -5.1020 -1.2343 34 1 0.5870 -4.9410 0.4040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934337191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:57 Heat of formation + Delta-G solvation = 20.511167 kcal Electronic energy + Delta-G solvation = -15940.399874 eV Core-core repulsion = 13384.761683 eV Total energy + Delta-G solvation = -2555.638191 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.72865 -39.69199 -35.65725 -34.22351 -31.61633 -30.23250 -28.93916 -27.25783 -24.75913 -24.20454 -21.75292 -21.18541 -20.82679 -18.76051 -18.37500 -17.09392 -16.86586 -16.32603 -16.00703 -15.28331 -15.04895 -14.76814 -14.51050 -14.29370 -14.10308 -13.45688 -13.27553 -13.13860 -12.83164 -12.48392 -12.36953 -12.33534 -11.99117 -11.84367 -11.69278 -11.51816 -11.25154 -10.61740 -10.52151 -10.29430 -9.75059 -9.11867 -8.21900 -6.32270 -0.18698 0.48983 0.87252 1.40015 1.41881 1.53049 1.93901 2.39826 3.10403 3.19532 3.37523 3.70320 3.81859 4.02511 4.25722 4.38614 4.42715 4.47840 4.55188 4.66204 4.76718 4.77628 4.87610 4.98069 5.04678 5.08629 5.19554 5.25078 5.30138 5.40835 5.64042 6.01475 6.26294 6.54249 6.83408 6.87168 7.37745 8.89440 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.056156 B = 0.003957 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.487256 B = 7073.834048 C = 7252.169931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.200 3.800 10 N -0.528 5.528 11 C 0.050 3.950 12 C -0.107 4.107 13 C -0.068 4.068 14 H 0.089 0.911 15 C -0.033 4.033 16 C 0.043 3.957 17 N -0.503 5.503 18 C 0.018 3.982 19 C -0.256 4.256 20 S 0.140 5.860 21 C 0.037 3.963 22 H 0.265 0.735 23 H 0.006 0.994 24 H -0.036 1.036 25 H 0.018 0.982 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.192 0.808 32 H 0.205 0.795 33 H 0.086 0.914 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.766 -21.348 1.950 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.073 3.927 10 N -0.252 5.252 11 C -0.079 4.079 12 C -0.145 4.145 13 C -0.089 4.089 14 H 0.107 0.893 15 C -0.074 4.074 16 C -0.234 4.234 17 N -0.218 5.218 18 C -0.132 4.132 19 C -0.395 4.395 20 S 0.393 5.607 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.024 0.976 24 H -0.018 1.018 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.208 0.792 32 H 0.222 0.778 33 H 0.104 0.896 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.698 -21.043 0.885 22.425 hybrid contribution -0.146 0.934 1.662 1.912 sum 7.552 -20.110 2.547 21.631 Atomic orbital electron populations 1.70078 1.07693 1.27964 1.51715 1.25924 0.95791 1.03225 0.94694 0.85370 0.78467 0.78152 0.78563 1.19622 1.20554 1.19066 1.21451 0.93523 0.91291 1.50220 0.92330 1.19538 0.90212 0.89352 0.93570 1.64715 1.26770 1.02788 1.30940 1.22635 0.98345 0.96741 0.90157 1.22342 1.01074 0.92709 0.98353 1.21948 0.97144 0.92673 0.97126 0.89291 1.20307 0.93870 0.90890 1.02358 1.27108 1.02834 1.01464 0.92024 1.66293 1.13375 1.21906 1.20226 1.22179 0.96466 0.92813 1.01763 1.27455 1.08662 1.08657 0.94747 1.83935 1.34879 1.27471 1.14371 1.23321 0.95437 0.89087 1.01218 0.92600 0.97562 1.01790 0.96334 0.92160 0.91224 0.91345 0.89374 0.87128 0.79172 0.77820 0.89584 0.94678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -31.02 8.82 25.60 0.23 -30.79 16 8 H 0.06 3.41 7.78 -2.91 -0.02 3.39 16 9 C 0.20 11.07 4.53 85.56 0.39 11.46 16 10 N -0.53 -23.83 5.25 -887.02 -4.66 -28.48 16 11 C 0.05 2.04 6.15 86.45 0.53 2.57 16 12 C -0.11 -3.38 6.14 31.47 0.19 -3.19 16 13 C -0.07 -1.91 3.05 -9.59 -0.03 -1.94 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.03 -0.75 5.20 29.85 0.16 -0.59 16 16 C 0.04 0.96 6.27 88.52 0.55 1.51 16 17 N -0.50 -12.41 10.54 -191.44 -2.02 -14.43 16 18 C 0.02 0.34 11.35 83.66 0.95 1.29 16 19 C -0.26 -3.85 11.37 66.78 0.76 -3.09 16 20 S 0.14 2.38 23.18 -56.49 -1.31 1.07 16 21 C 0.04 1.31 6.01 86.61 0.52 1.83 16 22 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 23 H 0.01 0.37 8.11 -2.39 -0.02 0.35 16 24 H -0.04 -2.13 7.81 -2.39 -0.02 -2.14 16 25 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.07 2.19 7.76 -2.39 -0.02 2.18 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 2.11 8.02 -2.39 -0.02 2.09 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 Total: -1.00 -68.54 297.58 0.11 -68.44 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.07 Total: 3.46 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 4.71 Total: -20.38 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -6.39 Total: -99.92 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.31 Total: 1.07 kcal Total: -68.54 0.11 -68.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934337191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.948 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds