Wall clock time and date at job start Sun Mar 29 2020 22:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47699 * 270.00038 * 3 2 1 5 5 H 1.48504 * 109.47018 * 30.00100 * 3 2 1 6 6 H 1.48499 * 109.47193 * 149.99563 * 3 2 1 7 7 C 1.38814 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99853 * 175.39893 * 7 2 1 9 9 N 1.36932 * 120.00271 * 355.40014 * 7 2 1 10 10 C 1.46955 * 120.59731 * 215.26689 * 9 7 2 11 11 C 1.53375 * 108.63635 * 235.20501 * 10 9 7 12 12 N 1.46957 * 108.63355 * 310.57220 * 11 10 9 13 13 C 1.34774 * 120.59574 * 235.20244 * 12 11 10 14 14 O 1.21495 * 120.00275 * 5.93349 * 13 12 11 15 15 C 1.48286 * 120.00265 * 185.93533 * 13 12 11 16 16 C 1.47479 * 128.71431 * 175.11390 * 15 13 12 17 17 N 1.30648 * 102.71912 * 180.28067 * 16 15 13 18 18 O 1.20843 * 109.61541 * 359.55657 * 17 16 15 19 19 N 1.20898 * 115.90855 * 0.50195 * 18 17 16 20 20 C 1.46973 * 118.81186 * 55.48271 * 12 11 10 21 21 C 1.46968 * 120.59041 * 35.24706 * 9 7 2 22 22 H 0.97000 * 119.99764 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.61483 * 115.45713 * 10 9 7 24 24 H 1.09004 * 109.75017 * 355.03008 * 10 9 7 25 25 H 1.09000 * 109.61122 * 190.82833 * 11 10 9 26 26 H 1.08997 * 109.60858 * 70.31718 * 11 10 9 27 27 H 1.08002 * 128.64236 * 0.02562 * 16 15 13 28 28 H 1.08994 * 109.61116 * 64.26042 * 20 12 11 29 29 H 1.08998 * 109.60848 * 184.77636 * 20 12 11 30 30 H 1.09005 * 109.60529 * 244.53879 * 21 9 7 31 31 H 1.09000 * 109.61296 * 5.04755 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0876 -1.2037 -0.0745 9 7 1.3289 -2.3861 0.0962 10 6 1.9004 -3.5205 0.8352 11 6 1.9490 -4.7379 -0.0964 12 7 0.6329 -4.8967 -0.7306 13 6 -0.0377 -6.0620 -0.6365 14 8 0.3928 -6.9558 0.0648 15 6 -1.3011 -6.2532 -1.3889 16 6 -2.1310 -7.4668 -1.5047 17 7 -3.1063 -7.0754 -2.2809 18 8 -2.9489 -5.9141 -2.5758 19 7 -1.9628 -5.3826 -2.1212 20 6 0.0638 -3.7641 -1.4745 21 6 0.0127 -2.5449 -0.5382 22 1 -0.4850 0.8401 -0.0004 23 1 1.2758 -3.7460 1.6996 24 1 2.9089 -3.2733 1.1671 25 1 2.1871 -5.6312 0.4811 26 1 2.7080 -4.5818 -0.8630 27 1 -1.9702 -8.4387 -1.0619 28 1 0.6916 -3.5404 -2.3369 29 1 -0.9436 -4.0143 -1.8073 30 1 -0.7464 -2.7010 0.2285 31 1 -0.2253 -1.6516 -1.1156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952350270.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:56 Heat of formation + Delta-G solvation = 129.392922 kcal Electronic energy + Delta-G solvation = -18759.924163 eV Core-core repulsion = 15662.714224 eV Total energy + Delta-G solvation = -3097.209938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.90354 -39.76555 -36.94041 -34.93416 -34.50808 -33.84270 -31.40546 -30.19944 -27.49406 -25.77428 -24.26781 -23.34471 -22.85136 -20.94647 -19.37578 -19.02806 -18.08132 -17.53563 -16.27883 -15.84301 -14.97778 -14.87858 -14.79884 -13.78106 -13.67551 -13.44797 -13.39280 -12.79141 -12.61319 -12.30825 -11.54569 -11.38229 -10.98385 -10.93173 -10.77017 -10.70926 -10.58711 -10.30423 -10.13190 -10.01890 -9.80887 -8.60709 -8.44810 -6.68743 -5.89893 -3.45812 0.79150 1.29409 2.73868 3.07505 3.30887 3.38141 3.39361 3.43110 3.50170 3.95405 4.39023 4.64107 4.78054 5.26143 5.28027 5.36206 5.74780 5.79090 5.88163 6.03829 6.19296 6.34328 6.41464 6.68877 6.80485 7.19329 7.49699 7.65978 7.68432 8.10776 8.38632 8.44192 9.09770 9.67379 10.26690 11.14927 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035343 B = 0.005992 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.048774 B = 4671.804829 C = 5318.698943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.572 5.572 13 C 0.591 3.409 14 O -0.537 6.537 15 C -0.028 4.028 16 C 0.032 3.968 17 N -0.358 5.358 18 O 0.331 5.669 19 N -0.311 5.311 20 C 0.051 3.949 21 C 0.156 3.844 22 H 0.257 0.743 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.225 0.775 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.020 0.980 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -10.874 -3.755 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.316 5.316 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.303 5.303 13 C 0.375 3.625 14 O -0.414 6.414 15 C -0.194 4.194 16 C -0.154 4.154 17 N -0.081 5.081 18 O 0.109 5.891 19 N -0.034 5.034 20 C -0.073 4.073 21 C 0.029 3.971 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.242 0.758 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.038 0.962 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.996 -10.529 -4.074 11.681 hybrid contribution 0.972 0.416 0.558 1.195 sum -2.024 -10.113 -3.516 10.897 Atomic orbital electron populations 1.69808 1.05450 1.25792 1.53736 1.25344 0.95584 0.98485 0.99401 0.86230 0.79151 0.83245 0.77755 1.21285 1.21454 1.20315 1.19173 0.90944 0.82940 1.45772 0.91542 1.43975 1.19155 1.10173 1.58308 1.21319 0.98513 0.87315 0.92453 1.22405 0.82094 1.00895 0.97486 1.48041 1.19762 1.11556 1.50897 1.16677 0.81182 0.83343 0.81308 1.90769 1.67785 1.42498 1.40373 1.26418 1.00641 0.90600 1.01708 1.27663 0.88971 1.01618 0.97131 1.75028 1.22361 0.96233 1.14528 1.85116 1.33623 1.17366 1.53033 1.75438 0.97318 1.21308 1.09355 1.23627 0.99589 0.87829 0.96224 1.21519 0.86761 0.94870 0.93936 0.93214 0.95640 0.91125 0.89589 0.91251 0.75839 0.91607 0.87692 0.96202 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.04 10.55 55.49 0.59 -24.45 16 2 C 0.01 0.29 5.33 -17.43 -0.09 0.19 16 3 Si 0.91 20.84 29.56 -169.99 -5.02 15.81 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.78 9.56 -15.06 -0.14 -6.92 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.59 -14.34 2.98 -171.76 -0.51 -14.85 16 10 C 0.13 2.67 6.67 -3.60 -0.02 2.65 16 11 C 0.09 1.68 6.60 -3.60 -0.02 1.65 16 12 N -0.57 -10.46 2.94 -173.16 -0.51 -10.97 16 13 C 0.59 10.26 7.71 -12.13 -0.09 10.16 16 14 O -0.54 -10.03 16.46 5.37 0.09 -9.94 16 15 C -0.03 -0.42 7.26 -80.07 -0.58 -1.00 16 16 C 0.03 0.37 12.63 -14.29 -0.18 0.19 16 17 N -0.36 -4.40 12.22 30.71 0.38 -4.03 16 18 O 0.33 4.34 11.65 27.27 0.32 4.66 16 19 N -0.31 -4.59 8.88 33.49 0.30 -4.29 16 20 C 0.05 0.97 6.48 -3.36 -0.02 0.95 16 21 C 0.16 3.60 5.50 -3.36 -0.02 3.58 16 22 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 25 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.23 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.11 1.86 3.96 -63.17 -0.25 1.61 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 3.05 5.79 -51.93 -0.30 2.75 16 LS Contribution 265.72 15.07 4.00 4.00 Total: -1.00 -29.02 265.72 -4.54 -33.56 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -2.99 Total: -0.96 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -1.18 Total: 11.46 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.24 Total: -58.59 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: 0.41 Total: -5.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.02 -4.54 -33.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952350270.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.953 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds