Wall clock time and date at job start Sun Mar 29 2020 22:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48495 * 109.47699 * 270.00038 * 3 2 1 5 5 H 1.48504 * 109.47018 * 30.00100 * 3 2 1 6 6 H 1.48499 * 109.47193 * 149.99563 * 3 2 1 7 7 C 1.38814 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99853 * 175.39893 * 7 2 1 9 9 N 1.36932 * 120.00271 * 355.40014 * 7 2 1 10 10 C 1.46955 * 120.59731 * 215.26689 * 9 7 2 11 11 C 1.53375 * 108.63635 * 235.20501 * 10 9 7 12 12 N 1.46957 * 108.63355 * 310.57220 * 11 10 9 13 13 C 1.34774 * 120.59574 * 235.20244 * 12 11 10 14 14 O 1.21495 * 120.00275 * 5.93349 * 13 12 11 15 15 C 1.48286 * 120.00265 * 185.93533 * 13 12 11 16 16 C 1.47479 * 128.71431 * 175.11390 * 15 13 12 17 17 N 1.30648 * 102.71912 * 180.28067 * 16 15 13 18 18 O 1.20843 * 109.61541 * 359.55657 * 17 16 15 19 19 N 1.20898 * 115.90855 * 0.50195 * 18 17 16 20 20 C 1.46973 * 118.81186 * 55.48271 * 12 11 10 21 21 C 1.46968 * 120.59041 * 35.24706 * 9 7 2 22 22 H 0.97000 * 119.99764 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.61483 * 115.45713 * 10 9 7 24 24 H 1.09004 * 109.75017 * 355.03008 * 10 9 7 25 25 H 1.09000 * 109.61122 * 190.82833 * 11 10 9 26 26 H 1.08997 * 109.60858 * 70.31718 * 11 10 9 27 27 H 1.08002 * 128.64236 * 0.02562 * 16 15 13 28 28 H 1.08994 * 109.61116 * 64.26042 * 20 12 11 29 29 H 1.08998 * 109.60848 * 184.77636 * 20 12 11 30 30 H 1.09005 * 109.60529 * 244.53879 * 21 9 7 31 31 H 1.09000 * 109.61296 * 5.04755 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0876 -1.2037 -0.0745 9 7 1.3289 -2.3861 0.0962 10 6 1.9004 -3.5205 0.8352 11 6 1.9490 -4.7379 -0.0964 12 7 0.6329 -4.8967 -0.7306 13 6 -0.0377 -6.0620 -0.6365 14 8 0.3928 -6.9558 0.0648 15 6 -1.3011 -6.2532 -1.3889 16 6 -2.1310 -7.4668 -1.5047 17 7 -3.1063 -7.0754 -2.2809 18 8 -2.9489 -5.9141 -2.5758 19 7 -1.9628 -5.3826 -2.1212 20 6 0.0638 -3.7641 -1.4745 21 6 0.0127 -2.5449 -0.5382 22 1 -0.4850 0.8401 -0.0004 23 1 1.2758 -3.7460 1.6996 24 1 2.9089 -3.2733 1.1671 25 1 2.1871 -5.6312 0.4811 26 1 2.7080 -4.5818 -0.8630 27 1 -1.9702 -8.4387 -1.0619 28 1 0.6916 -3.5404 -2.3369 29 1 -0.9436 -4.0143 -1.8073 30 1 -0.7464 -2.7010 0.2285 31 1 -0.2253 -1.6516 -1.1156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952350270.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:56 Heat of formation + Delta-G solvation = 110.690408 kcal Electronic energy + Delta-G solvation = -18760.735165 eV Core-core repulsion = 15662.714224 eV Total energy + Delta-G solvation = -3098.020940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.97131 -41.20298 -38.56140 -36.18896 -35.58837 -35.42581 -33.20139 -31.88215 -29.13321 -27.15507 -25.66451 -24.78206 -24.44709 -22.47004 -20.86813 -20.09924 -19.27976 -19.07549 -17.90428 -17.37856 -16.69274 -16.40999 -15.87675 -15.44266 -15.27239 -15.21748 -14.95513 -14.21292 -13.90779 -13.66411 -13.24831 -12.81589 -12.59840 -12.50218 -12.43422 -12.24742 -12.00792 -11.85998 -11.81688 -11.73431 -11.40031 -10.57786 -10.00928 -8.60785 -7.88988 -5.48681 -0.37720 0.32058 1.44613 1.49343 1.50521 1.59268 1.75742 2.29102 2.43287 2.50213 2.81496 3.26714 3.38367 3.65358 3.73982 4.18806 4.20925 4.35739 4.44655 4.55106 4.61043 4.74137 4.86285 5.04475 5.22597 5.41171 5.61359 5.67357 6.15241 6.41096 6.71267 7.11565 7.37621 7.75065 8.30853 9.13469 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035343 B = 0.005992 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.048774 B = 4671.804829 C = 5318.698943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.041 4.041 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.268 4.268 8 H 0.072 0.928 9 N -0.611 5.611 10 C 0.130 3.870 11 C 0.104 3.896 12 N -0.583 5.583 13 C 0.596 3.404 14 O -0.548 6.548 15 C -0.053 4.053 16 C 0.060 3.940 17 N -0.360 5.360 18 O 0.338 5.662 19 N -0.323 5.323 20 C 0.071 3.929 21 C 0.164 3.836 22 H 0.253 0.747 23 H 0.013 0.987 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.120 0.880 30 H -0.008 1.008 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -12.232 -4.184 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.237 4.237 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.398 4.398 8 H 0.090 0.910 9 N -0.335 5.335 10 C 0.004 3.996 11 C -0.019 4.019 12 N -0.314 5.314 13 C 0.382 3.618 14 O -0.426 6.426 15 C -0.217 4.217 16 C -0.125 4.125 17 N -0.085 5.085 18 O 0.115 5.885 19 N -0.043 5.043 20 C -0.054 4.054 21 C 0.037 3.963 22 H 0.062 0.938 23 H 0.031 0.969 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.277 0.723 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.010 0.990 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.528 -11.901 -4.499 12.972 hybrid contribution 0.786 0.744 0.709 1.294 sum -1.742 -11.157 -3.790 11.912 Atomic orbital electron populations 1.70001 1.06755 1.26032 1.55085 1.26072 0.96319 1.01582 0.99743 0.85219 0.78031 0.79182 0.77651 1.20891 1.22185 1.19349 1.19505 0.91394 0.83887 1.44997 0.91018 1.44214 1.19228 1.10789 1.59286 1.21419 0.98529 0.87240 0.92424 1.22280 0.82363 0.99934 0.97342 1.48054 1.20156 1.11805 1.51345 1.16820 0.81541 0.82645 0.80829 1.90758 1.68355 1.42681 1.40825 1.26217 1.00561 0.92207 1.02701 1.28189 0.87122 1.01723 0.95501 1.75077 1.22632 0.95742 1.15059 1.85119 1.32860 1.17830 1.52698 1.75294 0.97748 1.21958 1.09338 1.23274 1.00701 0.86438 0.94949 1.21224 0.85962 0.95667 0.93440 0.93761 0.96883 0.89985 0.88113 0.90163 0.72287 0.91396 0.86317 0.98971 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.01 10.55 21.65 0.23 -52.78 16 2 C -0.04 -2.22 5.33 84.86 0.45 -1.77 16 3 Si 0.97 43.08 29.56 68.60 2.03 45.11 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.27 -14.07 9.56 84.03 0.80 -13.27 16 8 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 9 N -0.61 -29.81 2.98 -697.33 -2.08 -31.88 16 10 C 0.13 5.25 6.67 86.42 0.58 5.82 16 11 C 0.10 3.53 6.60 86.42 0.57 4.10 16 12 N -0.58 -20.66 2.94 -820.07 -2.41 -23.07 16 13 C 0.60 19.67 7.71 86.92 0.67 20.34 16 14 O -0.55 -19.29 16.46 -3.70 -0.06 -19.36 16 15 C -0.05 -1.46 7.26 44.29 0.32 -1.14 16 16 C 0.06 1.21 12.63 87.31 1.10 2.32 16 17 N -0.36 -7.91 12.22 -61.42 -0.75 -8.66 16 18 O 0.34 8.27 11.65 140.85 1.64 9.91 16 19 N -0.32 -9.06 8.88 -52.05 -0.46 -9.52 16 20 C 0.07 2.66 6.48 86.56 0.56 3.22 16 21 C 0.16 7.76 5.50 86.56 0.48 8.23 16 22 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.08 3.06 7.94 -2.38 -0.02 3.04 16 25 H 0.10 3.15 6.99 -2.39 -0.02 3.13 16 26 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.26 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.12 4.16 3.96 -23.31 -0.09 4.07 16 30 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 31 H 0.09 4.83 5.79 -2.39 -0.01 4.82 16 Total: -1.00 -61.95 265.72 4.75 -57.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.08 Total: 5.20 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 5.53 Total: 27.86 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.47 Total: -125.91 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 1.58 Total: -9.44 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -61.95 4.75 -57.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952350270.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.882 kcal (2) G-P(sol) polarization free energy of solvation -61.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds