Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47032 * 299.99934 * 3 2 1 6 6 H 1.48501 * 109.47501 * 59.99844 * 3 2 1 7 7 C 1.38808 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00057 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77590 * 328.23979 * 10 9 7 12 12 C 1.55151 * 110.71893 * 204.99943 * 10 9 7 13 13 C 1.54917 * 101.58025 * 206.13557 * 12 10 9 14 14 N 1.47421 * 104.83002 * 37.01304 * 13 12 10 15 15 C 1.34778 * 125.64805 * 155.84496 * 14 13 12 16 16 O 1.21500 * 120.00164 * 180.02562 * 15 14 13 17 17 C 1.48273 * 119.99969 * 0.02562 * 15 14 13 18 18 C 1.47493 * 128.71393 * 179.70677 * 17 15 14 19 19 N 1.30644 * 102.71753 * 179.85082 * 18 17 15 20 20 O 1.20842 * 109.61921 * 0.42762 * 19 18 17 21 21 N 1.20899 * 115.90649 * 359.69617 * 20 19 18 22 22 C 1.47021 * 108.70450 * 335.86832 * 14 13 12 23 23 H 0.97000 * 120.00349 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00077 * 359.97438 * 9 7 2 25 25 H 1.08998 * 111.00631 * 88.06394 * 12 10 9 26 26 H 1.09004 * 111.00792 * 324.20792 * 12 10 9 27 27 H 1.09002 * 110.36419 * 155.85111 * 13 12 10 28 28 H 1.08994 * 110.36559 * 278.05860 * 13 12 10 29 29 H 1.08002 * 128.63853 * 359.97438 * 18 17 15 30 30 H 1.08996 * 109.88310 * 120.48076 * 22 14 13 31 31 H 1.09002 * 109.88672 * 241.49116 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0019 -3.5584 -0.5359 12 6 1.1936 -4.7898 -0.6127 13 6 1.7911 -6.0433 0.0739 14 7 2.1103 -5.6063 1.4452 15 6 2.2120 -6.4102 2.5222 16 8 2.4808 -5.9385 3.6092 17 6 1.9958 -7.8702 2.3805 18 6 2.0642 -8.9177 3.4166 19 7 1.7888 -10.0043 2.7457 20 8 1.6033 -9.7279 1.5840 21 7 1.7004 -8.5573 1.2976 22 6 2.2989 -4.1482 1.4435 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 0.0005 25 1 1.3224 -4.8379 -1.6940 26 1 0.1428 -4.6646 -0.3512 27 1 1.0587 -6.8503 0.0937 28 1 2.6948 -6.3648 -0.4437 29 1 2.2848 -8.8123 4.4686 30 1 1.5821 -3.6810 2.1187 31 1 3.3146 -3.9053 1.7557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970301599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = 106.973990 kcal Electronic energy + Delta-G solvation = -18077.160798 eV Core-core repulsion = 14978.978701 eV Total energy + Delta-G solvation = -3098.182096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.10712 -39.92863 -37.49762 -35.02709 -34.67723 -34.12605 -31.63895 -29.73381 -28.10103 -26.02120 -24.44177 -23.71412 -22.56295 -20.56621 -19.76969 -19.23880 -18.30188 -17.62787 -17.08322 -16.19226 -15.75576 -14.93816 -14.71330 -14.21035 -13.61634 -13.39718 -13.00566 -12.94812 -12.62935 -12.24681 -11.97429 -11.62515 -11.55479 -11.25937 -10.95741 -10.89644 -10.82397 -10.39433 -10.33313 -10.08674 -9.82372 -9.08081 -8.59419 -7.16303 -5.89480 -3.21022 0.59558 1.11453 2.50198 2.89658 3.23531 3.31719 3.37628 3.43883 3.45774 3.74394 4.48337 4.49226 4.58070 4.85924 5.09815 5.17760 5.24370 5.49653 5.60440 5.69178 5.85936 6.02541 6.19016 6.24778 6.33809 6.50789 6.75862 7.41425 7.60272 7.89052 8.21441 8.27537 9.39875 9.91885 10.26648 11.32427 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.052114 B = 0.004356 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.154970 B = 6426.268396 C = 6718.351035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.074 0.926 9 N -0.711 5.711 10 C 0.172 3.828 11 H 0.072 0.928 12 C -0.141 4.141 13 C 0.097 3.903 14 N -0.591 5.591 15 C 0.607 3.393 16 O -0.521 6.521 17 C -0.030 4.030 18 C 0.035 3.965 19 N -0.357 5.357 20 O 0.336 5.664 21 N -0.320 5.320 22 C 0.081 3.919 23 H 0.257 0.743 24 H 0.388 0.612 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.227 0.773 30 H 0.078 0.922 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 -17.246 1.692 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.350 5.350 10 C 0.060 3.940 11 H 0.090 0.910 12 C -0.180 4.180 13 C -0.026 4.026 14 N -0.323 5.323 15 C 0.391 3.609 16 O -0.396 6.396 17 C -0.195 4.195 18 C -0.151 4.151 19 N -0.081 5.081 20 O 0.111 5.889 21 N -0.041 5.041 22 C -0.043 4.043 23 H 0.067 0.933 24 H 0.222 0.778 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.243 0.757 30 H 0.097 0.903 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.369 -17.608 1.462 17.987 hybrid contribution 0.328 1.508 0.818 1.747 sum 3.697 -16.100 2.280 16.675 Atomic orbital electron populations 1.69668 1.05216 1.25936 1.56754 1.24783 0.95524 0.97922 1.02141 0.86097 0.78867 0.83791 0.77270 1.20388 1.21718 1.21698 1.19317 0.91193 0.83861 1.43924 0.90768 1.42392 1.05876 0.99394 1.87359 1.21225 0.95555 0.86424 0.90836 0.91040 1.23121 1.00728 0.93733 1.00424 1.22558 1.00457 0.98328 0.81287 1.48437 1.66410 1.09557 1.07933 1.16142 0.79177 0.81468 0.84105 1.90843 1.49138 1.74171 1.25426 1.26356 1.05649 0.98728 0.88817 1.27729 0.99341 0.84649 1.03341 1.75054 1.15771 1.24804 0.92433 1.85084 1.61744 1.20489 1.21556 1.75491 1.13093 0.91934 1.23596 1.23485 1.01895 0.75856 1.03090 0.93307 0.77784 0.89638 0.90422 0.89892 0.90956 0.75684 0.90317 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.66 9.96 -15.06 -0.15 -6.81 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.72 5.15 -51.65 -0.27 -16.98 16 10 C 0.17 3.14 3.61 -66.09 -0.24 2.90 16 11 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 12 C -0.14 -2.06 6.71 -24.58 -0.17 -2.22 16 13 C 0.10 1.26 6.23 -2.53 -0.02 1.24 16 14 N -0.59 -9.18 3.33 -171.47 -0.57 -9.75 16 15 C 0.61 9.46 7.87 -12.13 -0.10 9.36 16 16 O -0.52 -9.51 17.37 5.37 0.09 -9.42 16 17 C -0.03 -0.37 7.33 -80.07 -0.59 -0.96 16 18 C 0.04 0.35 12.63 -14.29 -0.18 0.17 16 19 N -0.36 -3.70 12.22 30.72 0.38 -3.33 16 20 O 0.34 3.55 11.65 27.27 0.32 3.87 16 21 N -0.32 -3.72 9.70 33.50 0.33 -3.39 16 22 C 0.08 1.46 6.62 -3.06 -0.02 1.44 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.39 9.73 7.76 -40.82 -0.32 9.41 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.19 8.01 -51.93 -0.42 0.78 16 27 H 0.08 1.01 6.31 -51.93 -0.33 0.68 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.23 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 276.64 15.07 4.17 4.17 Total: -1.00 -30.04 276.64 -4.54 -34.57 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.13 Total: 5.13 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.55 Total: 4.83 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.59 Total: -59.82 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.41 Total: -5.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.04 -4.54 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970301599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.548 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds