Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48503 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47032 * 299.99934 * 3 2 1 6 6 H 1.48501 * 109.47501 * 59.99844 * 3 2 1 7 7 C 1.38808 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00057 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77590 * 328.23979 * 10 9 7 12 12 C 1.55151 * 110.71893 * 204.99943 * 10 9 7 13 13 C 1.54917 * 101.58025 * 206.13557 * 12 10 9 14 14 N 1.47421 * 104.83002 * 37.01304 * 13 12 10 15 15 C 1.34778 * 125.64805 * 155.84496 * 14 13 12 16 16 O 1.21500 * 120.00164 * 180.02562 * 15 14 13 17 17 C 1.48273 * 119.99969 * 0.02562 * 15 14 13 18 18 C 1.47493 * 128.71393 * 179.70677 * 17 15 14 19 19 N 1.30644 * 102.71753 * 179.85082 * 18 17 15 20 20 O 1.20842 * 109.61921 * 0.42762 * 19 18 17 21 21 N 1.20899 * 115.90649 * 359.69617 * 20 19 18 22 22 C 1.47021 * 108.70450 * 335.86832 * 14 13 12 23 23 H 0.97000 * 120.00349 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00077 * 359.97438 * 9 7 2 25 25 H 1.08998 * 111.00631 * 88.06394 * 12 10 9 26 26 H 1.09004 * 111.00792 * 324.20792 * 12 10 9 27 27 H 1.09002 * 110.36419 * 155.85111 * 13 12 10 28 28 H 1.08994 * 110.36559 * 278.05860 * 13 12 10 29 29 H 1.08002 * 128.63853 * 359.97438 * 18 17 15 30 30 H 1.08996 * 109.88310 * 120.48076 * 22 14 13 31 31 H 1.09002 * 109.88672 * 241.49116 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0019 -3.5584 -0.5359 12 6 1.1936 -4.7898 -0.6127 13 6 1.7911 -6.0433 0.0739 14 7 2.1103 -5.6063 1.4452 15 6 2.2120 -6.4102 2.5222 16 8 2.4808 -5.9385 3.6092 17 6 1.9958 -7.8702 2.3805 18 6 2.0642 -8.9177 3.4166 19 7 1.7888 -10.0043 2.7457 20 8 1.6033 -9.7279 1.5840 21 7 1.7004 -8.5573 1.2976 22 6 2.2989 -4.1482 1.4435 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 0.0005 25 1 1.3224 -4.8379 -1.6940 26 1 0.1428 -4.6646 -0.3512 27 1 1.0587 -6.8503 0.0937 28 1 2.6948 -6.3648 -0.4437 29 1 2.2848 -8.8123 4.4686 30 1 1.5821 -3.6810 2.1187 31 1 3.3146 -3.9053 1.7557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970301599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = 86.018498 kcal Electronic energy + Delta-G solvation = -18078.069496 eV Core-core repulsion = 14978.978701 eV Total energy + Delta-G solvation = -3099.090795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.99021 -41.20817 -38.86885 -36.18587 -35.71046 -35.51616 -33.36040 -31.22470 -29.53709 -27.25595 -25.71088 -25.11890 -23.82605 -21.89867 -21.03804 -20.11826 -19.46760 -19.08577 -18.50343 -17.55039 -16.99725 -16.49269 -15.86415 -15.58878 -15.32904 -14.98871 -14.37518 -14.09390 -13.77749 -13.57985 -13.25307 -13.05108 -12.88175 -12.53973 -12.49014 -12.43271 -12.08816 -11.88392 -11.78148 -11.66254 -11.57168 -11.03438 -9.89855 -9.12257 -7.97772 -5.28377 -0.38711 0.29284 1.35041 1.49155 1.49890 1.59283 1.72564 2.27234 2.45721 2.55489 2.80557 3.32576 3.47688 3.59146 3.70199 3.86905 3.97789 4.28438 4.31229 4.42630 4.47416 4.64864 4.82869 4.93459 5.05626 5.15066 5.31197 5.52280 6.18741 6.23507 6.65492 7.31019 7.33821 8.01537 8.24883 9.25317 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.052114 B = 0.004356 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.154970 B = 6426.268396 C = 6718.351035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.724 5.724 10 C 0.167 3.833 11 H 0.080 0.920 12 C -0.130 4.130 13 C 0.104 3.896 14 N -0.595 5.595 15 C 0.608 3.392 16 O -0.554 6.554 17 C -0.050 4.050 18 C 0.054 3.946 19 N -0.359 5.359 20 O 0.349 5.651 21 N -0.315 5.315 22 C 0.093 3.907 23 H 0.252 0.748 24 H 0.376 0.624 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.255 0.745 30 H 0.047 0.953 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -19.021 1.317 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.169 4.169 13 C -0.018 4.018 14 N -0.327 5.327 15 C 0.394 3.606 16 O -0.432 6.432 17 C -0.214 4.214 18 C -0.131 4.131 19 N -0.084 5.084 20 O 0.121 5.879 21 N -0.034 5.034 22 C -0.032 4.032 23 H 0.061 0.939 24 H 0.209 0.791 25 H 0.126 0.874 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.271 0.729 30 H 0.065 0.935 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.426 -19.420 1.060 19.946 hybrid contribution 0.032 1.909 0.950 2.133 sum 4.457 -17.511 2.010 18.181 Atomic orbital electron populations 1.69811 1.06656 1.26148 1.59097 1.25544 0.96290 1.01095 1.03274 0.85119 0.78428 0.79930 0.76536 1.18841 1.21946 1.22428 1.19710 0.91683 0.84962 1.41509 0.90065 1.42538 1.05539 1.00576 1.87607 1.21428 0.96206 0.85550 0.91234 0.90196 1.23045 0.99480 0.92659 1.01685 1.22667 1.01717 0.97669 0.79700 1.48443 1.66548 1.08509 1.09184 1.16401 0.78177 0.82626 0.83387 1.90821 1.50536 1.75208 1.26595 1.25916 1.07877 0.97378 0.90226 1.28162 0.97544 0.83351 1.04069 1.75103 1.16282 1.24760 0.92235 1.85090 1.61184 1.19820 1.21815 1.75452 1.12280 0.92265 1.23400 1.23022 1.00628 0.77618 1.01927 0.93937 0.79111 0.87448 0.91385 0.88540 0.88692 0.72941 0.93479 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.25 -13.05 9.96 84.03 0.84 -12.21 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.72 -34.30 5.15 -317.32 -1.63 -35.93 16 10 C 0.17 5.95 3.61 46.18 0.17 6.12 16 11 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 12 C -0.13 -3.57 6.71 31.99 0.21 -3.35 16 13 C 0.10 2.46 6.23 86.86 0.54 3.00 16 14 N -0.59 -17.82 3.33 -814.71 -2.71 -20.53 16 15 C 0.61 18.31 7.87 86.91 0.68 18.99 16 16 O -0.55 -20.09 17.37 -3.71 -0.06 -20.15 16 17 C -0.05 -1.14 7.33 44.29 0.32 -0.81 16 18 C 0.05 0.93 12.63 87.31 1.10 2.03 16 19 N -0.36 -6.43 12.22 -61.41 -0.75 -7.18 16 20 O 0.35 6.41 11.65 140.85 1.64 8.05 16 21 N -0.32 -6.50 9.70 -52.04 -0.50 -7.01 16 22 C 0.09 3.35 6.62 86.73 0.57 3.92 16 23 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.38 19.31 7.76 -92.71 -0.72 18.59 16 25 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.07 2.03 8.01 -2.38 -0.02 2.01 16 27 H 0.10 2.07 6.31 -2.39 -0.02 2.06 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.25 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -64.85 276.64 3.65 -61.20 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.45 Total: 17.67 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 4.91 Total: 14.30 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.32 Total: -128.00 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 1.58 Total: -12.10 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.85 3.65 -61.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970301599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.220 kcal (2) G-P(sol) polarization free energy of solvation -64.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds