Wall clock time and date at job start Sun Mar 29 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34772 * 125.64566 * 178.98048 * 14 13 12 16 16 O 1.21512 * 120.00005 * 179.97438 * 15 14 13 17 17 C 1.48276 * 120.00341 * 359.97438 * 15 14 13 18 18 C 1.47496 * 128.71375 * 179.69672 * 17 15 14 19 19 N 1.30645 * 102.71344 * 179.90839 * 18 17 15 20 20 O 1.20835 * 109.62296 * 0.36611 * 19 18 17 21 21 N 1.20905 * 115.90746 * 359.73810 * 20 19 18 22 22 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 23 23 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 25 25 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 26 26 H 1.09001 * 110.71273 * 35.21090 * 12 10 9 27 27 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 28 28 H 1.08999 * 109.88345 * 218.38852 * 13 12 10 29 29 H 1.07994 * 128.63887 * 0.03667 * 18 17 15 30 30 H 1.09006 * 110.36031 * 265.28612 * 22 14 13 31 31 H 1.08995 * 110.37034 * 142.97033 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0731 -6.4396 -2.1737 16 8 3.5848 -5.9743 -3.1727 17 6 3.1545 -7.8962 -1.9087 18 6 3.7962 -8.9471 -2.7208 19 7 3.5684 -10.0283 -2.0237 20 8 2.9391 -9.7464 -1.0315 21 7 2.6676 -8.5765 -0.8928 22 6 2.2754 -4.1724 -1.4461 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0016 25 1 1.3316 -4.8408 1.6904 26 1 0.1472 -4.6639 0.3543 27 1 2.4949 -6.5368 0.5952 28 1 0.9627 -6.7544 -0.2956 29 1 4.3247 -8.8472 -3.6572 30 1 1.4090 -3.9412 -2.0658 31 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019543605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:54 Heat of formation + Delta-G solvation = 105.419217 kcal Electronic energy + Delta-G solvation = -18089.936954 eV Core-core repulsion = 14991.687437 eV Total energy + Delta-G solvation = -3098.249516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.15101 -40.00444 -37.59046 -35.08601 -34.73599 -34.40792 -31.72624 -29.69552 -28.05072 -25.97351 -24.44404 -23.63911 -22.63337 -20.63575 -19.95500 -19.28248 -18.32056 -17.71631 -17.38943 -16.15516 -15.80895 -15.02001 -14.68668 -14.42372 -13.76151 -13.37954 -13.31248 -12.88503 -12.74884 -12.49192 -12.19851 -11.60329 -11.46323 -11.27978 -11.00370 -10.80089 -10.72203 -10.46371 -10.37704 -10.04303 -9.30222 -9.11483 -8.66843 -7.24206 -6.23066 -3.26266 0.55120 1.07184 2.43968 2.82836 3.18841 3.27174 3.47585 3.50341 3.67633 3.69004 4.43648 4.54029 4.56506 4.77915 5.05365 5.09338 5.15584 5.40150 5.57665 5.61812 5.78094 5.87927 6.04384 6.14832 6.23201 6.37687 6.65669 7.33949 7.68344 7.81950 8.16971 8.62411 9.04691 9.91474 10.03535 11.24505 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051451 B = 0.004358 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.078793 B = 6424.030381 C = 6771.180987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.344 4.344 8 H 0.068 0.932 9 N -0.721 5.721 10 C 0.178 3.822 11 H 0.072 0.928 12 C -0.143 4.143 13 C 0.105 3.895 14 N -0.592 5.592 15 C 0.609 3.391 16 O -0.520 6.520 17 C -0.032 4.032 18 C 0.036 3.964 19 N -0.357 5.357 20 O 0.337 5.663 21 N -0.319 5.319 22 C 0.082 3.918 23 H 0.256 0.744 24 H 0.371 0.629 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.227 0.773 30 H 0.072 0.928 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -17.319 -1.329 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.236 4.236 3 Si 0.910 3.090 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.474 4.474 8 H 0.086 0.914 9 N -0.361 5.361 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.182 4.182 13 C -0.018 4.018 14 N -0.325 5.325 15 C 0.393 3.607 16 O -0.395 6.395 17 C -0.198 4.198 18 C -0.150 4.150 19 N -0.081 5.081 20 O 0.112 5.888 21 N -0.040 5.040 22 C -0.042 4.042 23 H 0.067 0.933 24 H 0.205 0.795 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.243 0.757 30 H 0.091 0.909 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.963 -16.139 -1.063 16.919 hybrid contribution 0.186 -1.215 -0.770 1.451 sum 5.150 -17.355 -1.834 18.195 Atomic orbital electron populations 1.70907 1.06097 1.28534 1.52673 1.25839 0.96964 1.01146 0.99648 0.83243 0.74284 0.75416 0.76024 1.20934 1.22088 1.22049 1.20072 0.92192 0.85504 1.49648 0.91398 1.42314 1.04896 1.00340 1.88558 1.21253 0.95420 0.85671 0.91156 0.91023 1.22996 1.00734 0.93817 1.00622 1.22157 0.96852 0.97790 0.85046 1.48399 1.51959 1.09833 1.22354 1.16108 0.79842 0.81481 0.83247 1.90848 1.47342 1.74359 1.26966 1.26328 1.02019 0.98756 0.92665 1.27733 1.00154 0.84660 1.02437 1.75055 1.10510 1.24775 0.97711 1.85086 1.49955 1.20419 1.33332 1.75498 1.15747 0.92050 1.20670 1.23610 1.02429 0.75606 1.02598 0.93309 0.79506 0.89808 0.90482 0.90949 0.91164 0.75655 0.90937 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.99 13.70 55.49 0.76 -27.23 16 2 C -0.04 -1.05 5.50 -17.43 -0.10 -1.15 16 3 Si 1.08 25.12 29.92 -169.99 -5.09 20.04 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.34 -9.23 9.96 -15.06 -0.15 -9.38 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -16.91 5.24 -51.36 -0.27 -17.18 16 10 C 0.18 3.30 3.71 -65.79 -0.24 3.06 16 11 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 12 C -0.14 -2.07 6.60 -24.90 -0.16 -2.24 16 13 C 0.10 1.37 5.60 -3.06 -0.02 1.35 16 14 N -0.59 -9.16 3.33 -171.47 -0.57 -9.73 16 15 C 0.61 9.37 7.87 -12.13 -0.10 9.27 16 16 O -0.52 -9.36 17.30 5.36 0.09 -9.26 16 17 C -0.03 -0.40 7.35 -80.07 -0.59 -0.98 16 18 C 0.04 0.35 12.63 -14.29 -0.18 0.17 16 19 N -0.36 -3.65 12.22 30.72 0.38 -3.28 16 20 O 0.34 3.54 11.65 27.27 0.32 3.86 16 21 N -0.32 -3.68 10.17 33.49 0.34 -3.34 16 22 C 0.08 1.47 6.60 -2.53 -0.02 1.46 16 23 H 0.26 7.45 6.77 -40.82 -0.28 7.18 16 24 H 0.37 8.91 6.59 -40.82 -0.27 8.64 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 27 H 0.07 0.88 7.75 -51.93 -0.40 0.47 16 28 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 29 H 0.23 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.51 8.04 -51.93 -0.42 1.10 16 LS Contribution 275.95 15.07 4.16 4.16 Total: -1.00 -30.88 275.95 -4.52 -35.40 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.08 Total: 5.00 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.55 Total: 1.56 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.64 Total: -60.75 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: 0.41 Total: -5.41 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.04 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.88 -4.52 -35.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019543605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.819 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds