Wall clock time and date at job start Sun Mar 29 2020 22:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34772 * 125.64566 * 178.98048 * 14 13 12 16 16 O 1.21512 * 120.00005 * 179.97438 * 15 14 13 17 17 C 1.48276 * 120.00341 * 359.97438 * 15 14 13 18 18 C 1.47496 * 128.71375 * 179.69672 * 17 15 14 19 19 N 1.30645 * 102.71344 * 179.90839 * 18 17 15 20 20 O 1.20835 * 109.62296 * 0.36611 * 19 18 17 21 21 N 1.20905 * 115.90746 * 359.73810 * 20 19 18 22 22 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 23 23 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 25 25 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 26 26 H 1.09001 * 110.71273 * 35.21090 * 12 10 9 27 27 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 28 28 H 1.08999 * 109.88345 * 218.38852 * 13 12 10 29 29 H 1.07994 * 128.63887 * 0.03667 * 18 17 15 30 30 H 1.09006 * 110.36031 * 265.28612 * 22 14 13 31 31 H 1.08995 * 110.37034 * 142.97033 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0731 -6.4396 -2.1737 16 8 3.5848 -5.9743 -3.1727 17 6 3.1545 -7.8962 -1.9087 18 6 3.7962 -8.9471 -2.7208 19 7 3.5684 -10.0283 -2.0237 20 8 2.9391 -9.7464 -1.0315 21 7 2.6676 -8.5765 -0.8928 22 6 2.2754 -4.1724 -1.4461 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0016 25 1 1.3316 -4.8408 1.6904 26 1 0.1472 -4.6639 0.3543 27 1 2.4949 -6.5368 0.5952 28 1 0.9627 -6.7544 -0.2956 29 1 4.3247 -8.8472 -3.6572 30 1 1.4090 -3.9412 -2.0658 31 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019543605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:53 Heat of formation + Delta-G solvation = 83.828598 kcal Electronic energy + Delta-G solvation = -18090.873193 eV Core-core repulsion = 14991.687437 eV Total energy + Delta-G solvation = -3099.185756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.02168 -41.28364 -38.97178 -36.44550 -35.81129 -35.57439 -33.40325 -31.18348 -29.50858 -27.18761 -25.68469 -25.15949 -23.91423 -22.04257 -21.14781 -20.15006 -19.62575 -19.18448 -18.68266 -17.51463 -17.03902 -16.56576 -15.92756 -15.76432 -15.53006 -14.92986 -14.56387 -14.06706 -13.97403 -13.88047 -13.18264 -12.94959 -12.77727 -12.55441 -12.46253 -12.40780 -11.92817 -11.88661 -11.81039 -11.71207 -11.28507 -11.01870 -9.98697 -9.22620 -8.41703 -5.38930 -0.42168 0.26455 1.28744 1.60406 1.66975 1.69078 1.85373 2.22556 2.42832 2.69316 2.76842 3.30886 3.40553 3.48055 3.67663 3.77606 3.89029 4.08457 4.20270 4.34202 4.40240 4.55081 4.70253 4.82612 4.92414 5.04656 5.19905 5.58207 6.11509 6.47846 6.58755 7.03014 7.30738 7.92315 8.01799 9.09752 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051451 B = 0.004358 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.078793 B = 6424.030381 C = 6771.180987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.095 4.095 3 Si 1.125 2.875 4 H -0.293 1.293 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.340 4.340 8 H 0.068 0.932 9 N -0.733 5.733 10 C 0.171 3.829 11 H 0.067 0.933 12 C -0.130 4.130 13 C 0.112 3.888 14 N -0.596 5.596 15 C 0.611 3.389 16 O -0.552 6.552 17 C -0.052 4.052 18 C 0.056 3.944 19 N -0.359 5.359 20 O 0.349 5.651 21 N -0.315 5.315 22 C 0.094 3.906 23 H 0.247 0.753 24 H 0.366 0.634 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.255 0.745 30 H 0.058 0.942 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -19.035 -1.018 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.287 4.287 3 Si 0.950 3.050 4 H -0.219 1.219 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.471 4.471 8 H 0.086 0.914 9 N -0.374 5.374 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.169 4.169 13 C -0.010 4.010 14 N -0.328 5.328 15 C 0.397 3.603 16 O -0.429 6.429 17 C -0.216 4.216 18 C -0.130 4.130 19 N -0.084 5.084 20 O 0.121 5.879 21 N -0.033 5.033 22 C -0.031 4.031 23 H 0.057 0.943 24 H 0.199 0.801 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.271 0.729 30 H 0.076 0.924 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.886 -17.905 -0.731 18.862 hybrid contribution -0.056 -0.833 -0.877 1.211 sum 5.830 -18.738 -1.609 19.690 Atomic orbital electron populations 1.71002 1.07169 1.28130 1.55580 1.27129 0.97045 1.04531 1.00018 0.82663 0.73450 0.71777 0.77156 1.21930 1.20162 1.20652 1.20384 0.92441 0.86819 1.47465 0.91373 1.42422 1.04800 1.01205 1.88939 1.21398 0.95690 0.85180 0.91734 0.91461 1.22910 0.99958 0.92389 1.01596 1.22241 0.97555 0.97182 0.84067 1.48381 1.52427 1.08692 1.23337 1.16354 0.78842 0.82599 0.82495 1.90828 1.48523 1.75351 1.28205 1.25890 1.04131 0.97411 0.94152 1.28172 0.98808 0.83321 1.02676 1.75105 1.10831 1.24746 0.97717 1.85093 1.49617 1.19752 1.33400 1.75468 1.15163 0.92394 1.20297 1.23134 1.00843 0.77588 1.01529 0.94276 0.80125 0.88028 0.90426 0.89265 0.89484 0.72863 0.92407 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.98 13.70 21.65 0.30 -58.68 16 2 C -0.10 -5.36 5.50 84.86 0.47 -4.89 16 3 Si 1.12 50.68 29.92 68.60 2.05 52.73 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.34 -18.36 9.96 84.03 0.84 -17.52 16 8 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 9 N -0.73 -34.73 5.24 -316.40 -1.66 -36.39 16 10 C 0.17 6.30 3.71 46.39 0.17 6.47 16 11 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 12 C -0.13 -3.56 6.60 31.78 0.21 -3.35 16 13 C 0.11 2.67 5.60 86.73 0.49 3.15 16 14 N -0.60 -17.77 3.33 -814.71 -2.71 -20.48 16 15 C 0.61 18.08 7.87 86.91 0.68 18.77 16 16 O -0.55 -19.60 17.30 -3.75 -0.06 -19.67 16 17 C -0.05 -1.16 7.35 44.29 0.33 -0.83 16 18 C 0.06 0.93 12.63 87.31 1.10 2.04 16 19 N -0.36 -6.31 12.22 -61.42 -0.75 -7.06 16 20 O 0.35 6.34 11.65 140.85 1.64 7.99 16 21 N -0.32 -6.43 10.17 -52.05 -0.53 -6.96 16 22 C 0.09 3.41 6.60 86.85 0.57 3.99 16 23 H 0.25 14.78 6.77 -92.71 -0.63 14.15 16 24 H 0.37 17.92 6.59 -92.71 -0.61 17.31 16 25 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 27 H 0.09 1.88 7.75 -2.39 -0.02 1.87 16 28 H 0.09 1.85 7.86 -2.39 -0.02 1.83 16 29 H 0.26 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -66.49 275.95 3.84 -62.65 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.70 Total: 18.05 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 4.86 Total: 7.82 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.35 Total: -129.58 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 1.58 Total: -11.68 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -66.49 3.84 -62.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019543605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.481 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds