Wall clock time and date at job start Sun Mar 29 2020 22:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99637 * 2 1 4 4 H 1.48495 * 109.47084 * 240.00431 * 3 2 1 5 5 H 1.48498 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46719 * 120.00284 * 3 2 1 7 7 C 1.38807 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00141 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00164 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.84940 * 23.81158 * 10 9 7 12 12 C 1.53787 * 113.61073 * 155.00545 * 10 9 7 13 13 C 1.53784 * 87.07923 * 140.06858 * 12 10 9 14 14 H 1.09004 * 113.61162 * 220.01809 * 13 12 10 15 15 N 1.46499 * 113.61434 * 89.11404 * 13 12 10 16 16 C 1.34778 * 119.99940 * 155.00095 * 15 13 12 17 17 O 1.21503 * 119.99862 * 359.97438 * 16 15 13 18 18 C 1.48282 * 120.00088 * 180.02562 * 16 15 13 19 19 C 1.47486 * 128.71113 * 179.69839 * 18 16 15 20 20 N 1.30650 * 102.71663 * 179.90996 * 19 18 16 21 21 O 1.20839 * 109.61364 * 0.36605 * 20 19 18 22 22 N 1.20903 * 115.91050 * 359.74144 * 21 20 19 23 23 C 1.53779 * 87.08045 * 334.56667 * 13 12 10 24 24 H 0.96992 * 120.00637 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00128 * 0.02562 * 9 7 2 26 26 H 1.09004 * 113.61202 * 254.61611 * 12 10 9 27 27 H 1.08994 * 113.61447 * 25.52042 * 12 10 9 28 28 H 0.97000 * 120.00274 * 334.99936 * 15 13 12 29 29 H 1.07994 * 128.64352 * 0.03383 * 19 18 16 30 30 H 1.09006 * 113.61307 * 270.88660 * 23 13 12 31 31 H 1.08999 * 113.69146 * 139.99146 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 3.0658 -3.5637 0.4050 12 6 1.2604 -4.8288 0.5949 13 6 1.8501 -5.6981 -0.5283 14 1 1.1364 -6.4024 -0.9557 15 7 3.1277 -6.3231 -0.1771 16 6 3.5142 -7.4583 -0.7924 17 8 2.8027 -7.9635 -1.6379 18 6 4.8070 -8.0913 -0.4366 19 6 5.4102 -9.3239 -0.9770 20 7 6.5350 -9.4067 -0.3176 21 8 6.6249 -8.4774 0.4495 22 7 5.7013 -7.6972 0.4447 23 6 2.0015 -4.4032 -1.3438 24 1 -0.4851 0.8399 0.0004 25 1 0.3558 -2.3881 -0.0005 26 1 1.5909 -5.1202 1.5919 27 1 0.1801 -4.7009 0.5265 28 1 3.6955 -5.9200 0.4981 29 1 5.0202 -9.9908 -1.7316 30 1 1.1237 -4.1589 -1.9422 31 1 2.9298 -4.3497 -1.9126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020786320.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:49 Heat of formation + Delta-G solvation = 117.613477 kcal Electronic energy + Delta-G solvation = -17654.976291 eV Core-core repulsion = 14557.255557 eV Total energy + Delta-G solvation = -3097.720733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.22495 -40.19806 -38.15613 -35.13341 -34.77240 -34.13882 -32.65907 -29.97392 -26.63239 -25.23911 -24.63654 -24.21294 -22.37591 -21.30185 -19.34206 -19.21687 -18.68863 -17.86873 -17.13472 -16.13709 -15.29856 -15.22472 -14.93141 -14.50560 -13.93510 -13.68935 -13.10678 -12.76536 -12.33190 -12.23452 -11.95731 -11.73926 -11.66203 -11.08749 -10.94107 -10.87586 -10.56926 -10.44729 -10.26797 -9.98961 -9.64633 -9.09374 -8.92322 -7.04173 -5.84070 -3.13713 0.45772 1.00819 2.40916 2.71253 3.11991 3.19866 3.40258 3.45038 3.45802 3.68175 4.44893 4.54094 4.56320 4.88445 5.01677 5.06856 5.34028 5.41232 5.74129 5.78487 5.99046 6.16774 6.20728 6.29972 6.51272 6.55783 6.94528 7.20666 7.63218 7.79375 8.08934 8.34110 9.45570 10.01548 10.36067 11.38068 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.004036 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.411184 B = 6935.963456 C = 7447.376900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.158 4.158 13 C 0.112 3.888 14 H 0.102 0.898 15 N -0.683 5.683 16 C 0.605 3.395 17 O -0.516 6.516 18 C -0.039 4.039 19 C 0.037 3.963 20 N -0.355 5.355 21 O 0.342 5.658 22 N -0.319 5.319 23 C -0.175 4.175 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.409 0.591 29 H 0.228 0.772 30 H 0.090 0.910 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.614 -17.460 0.124 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.198 4.198 13 C 0.008 3.992 14 H 0.120 0.880 15 N -0.334 5.334 16 C 0.387 3.613 17 O -0.390 6.390 18 C -0.205 4.205 19 C -0.148 4.148 20 N -0.079 5.079 21 O 0.115 5.885 22 N -0.039 5.039 23 C -0.218 4.218 24 H 0.067 0.933 25 H 0.221 0.779 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.244 0.756 29 H 0.244 0.756 30 H 0.109 0.891 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.084 -17.410 0.265 19.639 hybrid contribution -0.284 0.942 -0.360 1.047 sum 8.800 -16.468 -0.095 18.672 Atomic orbital electron populations 1.69642 1.05164 1.26008 1.57118 1.24767 0.95518 0.97827 1.02531 0.86260 0.78569 0.83397 0.77914 1.21178 1.21617 1.21165 1.19247 0.91063 0.84201 1.43465 0.91126 1.42380 1.05775 0.99793 1.86913 1.21636 0.95185 0.85308 0.92559 0.90752 1.23886 1.01832 0.96969 0.97110 1.21997 0.83883 0.94444 0.98895 0.87978 1.45589 1.22466 1.24238 1.41076 1.16442 0.82093 0.80900 0.81885 1.90842 1.52758 1.63420 1.31967 1.26345 0.99125 0.97243 0.97761 1.27751 0.89304 0.96644 1.01151 1.75080 1.19767 1.08462 1.04583 1.85097 1.35350 1.23099 1.44905 1.75418 0.97504 1.13993 1.16996 1.24345 1.02312 0.94663 1.00445 0.93306 0.77945 0.91521 0.88592 0.75577 0.75585 0.89137 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.15 5.40 -52.64 -0.28 -17.43 16 10 C 0.17 3.06 4.35 -67.12 -0.29 2.77 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.16 -2.36 7.58 -25.91 -0.20 -2.55 16 13 C 0.11 1.58 4.32 -67.12 -0.29 1.29 16 14 H 0.10 1.44 7.47 -51.93 -0.39 1.06 16 15 N -0.68 -8.55 5.26 -53.82 -0.28 -8.83 16 16 C 0.60 7.73 7.85 -12.13 -0.10 7.63 16 17 O -0.52 -7.84 16.65 5.36 0.09 -7.75 16 18 C -0.04 -0.42 7.56 -80.07 -0.61 -1.02 16 19 C 0.04 0.32 12.63 -14.29 -0.18 0.14 16 20 N -0.36 -3.35 12.22 30.71 0.38 -2.98 16 21 O 0.34 3.36 11.65 27.26 0.32 3.67 16 22 N -0.32 -3.38 12.13 33.49 0.41 -2.98 16 23 C -0.18 -2.92 7.68 -25.92 -0.20 -3.12 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.39 9.86 7.92 -40.82 -0.32 9.54 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.45 8.12 -51.93 -0.42 1.03 16 28 H 0.41 4.63 8.56 -40.82 -0.35 4.28 16 29 H 0.23 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -30.55 283.47 -4.65 -35.20 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.14 Total: 8.87 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.10 Total: -2.13 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.94 Total: -59.08 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: 0.41 Total: -4.08 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.55 -4.65 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020786320.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.815 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds