Wall clock time and date at job start Sun Mar 29 2020 22:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48488 * 109.47337 * 269.99905 * 3 2 1 5 5 H 1.48506 * 109.47035 * 30.00418 * 3 2 1 6 6 H 1.48506 * 109.46828 * 149.99988 * 3 2 1 7 7 C 1.38816 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00294 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99496 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99497 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85235 * 23.80577 * 10 9 7 12 12 C 1.53786 * 113.61175 * 155.00061 * 10 9 7 13 13 C 1.53785 * 87.08274 * 89.19897 * 12 10 9 14 14 H 1.08995 * 113.61548 * 140.06613 * 13 12 10 15 15 N 1.46504 * 113.61251 * 270.88464 * 13 12 10 16 16 C 1.34768 * 119.99797 * 203.47215 * 15 13 12 17 17 O 1.21499 * 120.00383 * 359.97438 * 16 15 13 18 18 C 1.48280 * 119.99826 * 180.02562 * 16 15 13 19 19 C 1.47496 * 128.71180 * 179.97438 * 18 16 15 20 20 N 1.30642 * 102.71677 * 179.97438 * 19 18 16 21 21 O 1.20839 * 109.61891 * 359.97438 * 20 19 18 22 22 N 1.20905 * 115.90819 * 0.02562 * 21 20 19 23 23 C 1.53781 * 87.17329 * 25.47419 * 13 12 10 24 24 H 0.96998 * 119.99382 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00203 * 359.97438 * 9 7 2 26 26 H 1.08997 * 113.61251 * 334.65009 * 12 10 9 27 27 H 1.08996 * 113.61419 * 203.74773 * 12 10 9 28 28 H 0.97006 * 119.99704 * 23.46981 * 15 13 12 29 29 H 1.07995 * 128.63900 * 359.74069 * 19 18 16 30 30 H 1.09003 * 113.61646 * 89.07214 * 23 13 12 31 31 H 1.08994 * 113.61524 * 219.98277 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.3999 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5279 -3.2966 -0.4077 12 6 5.5262 -2.3654 -0.5960 13 6 6.0127 -2.0269 0.8231 14 1 6.9636 -2.4928 1.0814 15 7 5.9793 -0.5946 1.1288 16 6 6.7787 -0.0920 2.0905 17 8 7.5267 -0.8269 2.7042 18 6 6.7445 1.3576 2.4003 19 6 7.5264 2.1053 3.4029 20 7 7.1002 3.3301 3.2450 21 8 6.2657 3.3599 2.3714 22 7 6.0096 2.2999 1.8492 23 6 4.7878 -2.7968 1.3444 24 1 -0.4849 0.8401 0.0004 25 1 3.8646 -0.3623 0.0004 26 1 5.6417 -1.5451 -1.3044 27 1 5.9119 -3.3115 -0.9757 28 1 5.3819 -0.0079 0.6391 29 1 8.2645 1.7324 4.0974 30 1 4.9719 -3.8607 1.4942 31 1 4.3075 -2.3246 2.2014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022871544.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:51 Heat of formation + Delta-G solvation = 104.898558 kcal Electronic energy + Delta-G solvation = -18577.916194 eV Core-core repulsion = 15479.644100 eV Total energy + Delta-G solvation = -3098.272094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.06148 -41.47724 -39.56399 -36.00953 -35.62880 -35.60779 -34.21944 -32.53720 -27.76127 -26.59278 -26.15542 -25.25418 -24.01658 -22.02028 -21.09608 -20.18899 -19.60597 -19.46354 -18.74234 -17.28848 -16.70628 -16.39900 -16.24515 -15.82903 -15.56728 -15.21804 -14.68633 -14.00244 -13.83512 -13.70904 -13.42176 -13.07979 -12.91195 -12.66461 -12.53048 -12.11596 -11.95950 -11.90459 -11.77442 -11.62563 -11.26877 -10.91409 -10.24767 -9.36400 -8.06646 -5.41240 -0.45781 0.24136 1.34640 1.36616 1.42958 1.44572 1.68457 2.24760 2.36137 2.44275 2.78369 3.23312 3.40295 3.61381 3.67657 3.68006 3.79752 4.21931 4.27066 4.38500 4.64576 4.87879 4.90314 4.99701 5.16610 5.22509 5.45095 5.76675 6.06898 6.18000 6.67227 7.02150 7.25509 7.77893 7.92905 9.14061 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.009267 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.285563 B = 3020.835262 C = 4366.613230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.245 1.245 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.733 5.733 10 C 0.141 3.859 11 H 0.073 0.927 12 C -0.142 4.142 13 C 0.118 3.882 14 H 0.119 0.881 15 N -0.691 5.691 16 C 0.610 3.390 17 O -0.532 6.532 18 C -0.063 4.063 19 C 0.065 3.935 20 N -0.362 5.362 21 O 0.338 5.662 22 N -0.333 5.333 23 C -0.176 4.176 24 H 0.257 0.743 25 H 0.359 0.641 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.402 0.598 29 H 0.266 0.734 30 H 0.118 0.882 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.802 0.577 3.474 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.169 1.169 7 C -0.362 4.362 8 H 0.081 0.919 9 N -0.376 5.376 10 C 0.032 3.968 11 H 0.091 0.909 12 C -0.181 4.181 13 C 0.014 3.986 14 H 0.137 0.863 15 N -0.343 5.343 16 C 0.393 3.607 17 O -0.408 6.408 18 C -0.228 4.228 19 C -0.121 4.121 20 N -0.088 5.088 21 O 0.113 5.887 22 N -0.051 5.051 23 C -0.217 4.217 24 H 0.066 0.934 25 H 0.194 0.806 26 H 0.090 0.910 27 H 0.157 0.843 28 H 0.239 0.761 29 H 0.281 0.719 30 H 0.136 0.864 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.519 0.922 3.493 18.868 hybrid contribution -0.251 0.720 0.150 0.778 sum 18.268 1.642 3.643 18.700 Atomic orbital electron populations 1.69872 1.07064 1.26597 1.59520 1.25474 0.96079 1.01060 1.02699 0.85611 0.79081 0.79989 0.78256 1.20284 1.22717 1.16906 1.19063 0.82374 0.93582 1.41190 0.91899 1.42568 1.02467 1.03263 1.89306 1.21613 0.92044 0.88125 0.95019 0.90852 1.23818 0.95316 1.04403 0.94584 1.22127 1.00133 0.78580 0.97732 0.86309 1.45936 1.40571 1.10841 1.36905 1.16526 0.80613 0.83325 0.80249 1.90793 1.40694 1.58402 1.50887 1.26359 0.99260 0.97170 1.00021 1.28290 1.00243 0.85252 0.98318 1.75080 1.04694 1.22433 1.06612 1.85118 1.41637 1.26967 1.34939 1.75511 1.17969 0.93891 1.17734 1.24256 0.96728 1.01464 0.99241 0.93385 0.80624 0.91049 0.84293 0.76065 0.71862 0.86391 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.44 13.97 21.65 0.30 -62.14 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 3 Si 0.94 44.95 27.74 68.60 1.90 46.85 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.24 -10.36 6.30 99.48 0.63 -9.74 16 7 C -0.23 -12.78 10.45 84.03 0.88 -11.90 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 9 N -0.73 -32.12 4.99 -319.99 -1.60 -33.71 16 10 C 0.14 4.77 4.57 45.62 0.21 4.98 16 11 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 12 C -0.14 -3.45 7.58 31.12 0.24 -3.22 16 13 C 0.12 3.11 4.30 45.52 0.20 3.30 16 14 H 0.12 2.76 7.50 -2.39 -0.02 2.74 16 15 N -0.69 -20.63 5.12 -442.49 -2.26 -22.90 16 16 C 0.61 17.76 7.85 86.92 0.68 18.44 16 17 O -0.53 -16.43 16.66 -3.71 -0.06 -16.49 16 18 C -0.06 -1.67 7.56 44.30 0.34 -1.33 16 19 C 0.07 1.27 12.63 87.31 1.10 2.37 16 20 N -0.36 -8.12 12.22 -61.44 -0.75 -8.87 16 21 O 0.34 8.76 11.65 140.85 1.64 10.40 16 22 N -0.33 -9.67 12.13 -52.06 -0.63 -10.30 16 23 C -0.18 -5.18 7.70 31.22 0.24 -4.94 16 24 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 25 H 0.36 15.05 3.22 -92.71 -0.30 14.75 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.40 13.07 5.80 -92.70 -0.54 12.54 16 29 H 0.27 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -69.38 274.73 3.16 -66.22 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.27 Total: 26.35 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 4.34 Total: 4.59 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -4.94 Total: -137.92 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 1.58 Total: -6.09 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Total: -69.38 3.16 -66.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022871544.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.119 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds