Wall clock time and date at job start Sun Mar 29 2020 23:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47373 * 355.35745 * 3 2 1 5 5 H 1.48501 * 109.47224 * 115.36378 * 3 2 1 6 6 H 1.48505 * 109.47188 * 235.35974 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46494 * 114.57476 * 272.66929 * 11 10 9 13 13 C 1.34783 * 119.99677 * 248.66915 * 12 11 10 14 14 O 1.21277 * 120.00082 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99913 * 179.97438 * 13 12 11 16 16 N 1.46498 * 109.47013 * 179.97438 * 15 13 12 17 17 N 1.28884 * 125.44707 * 90.00414 * 16 15 13 18 18 C 1.31040 * 107.91921 * 179.97438 * 17 16 15 19 19 N 1.33321 * 106.89793 * 0.02562 * 18 17 16 20 20 N 1.28778 * 125.45321 * 269.69717 * 16 15 13 21 21 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 22 22 H 0.97005 * 119.99783 * 184.87920 * 1 2 3 23 23 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 24 24 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 25 25 H 1.08994 * 114.08496 * 139.78289 * 11 10 9 26 26 H 0.97001 * 120.00473 * 68.67052 * 12 11 10 27 27 H 1.08997 * 109.47425 * 300.00579 * 15 13 12 28 28 H 1.08999 * 109.46939 * 60.00757 * 15 13 12 29 29 H 1.07995 * 126.55352 * 179.97438 * 18 17 16 30 30 H 1.09003 * 113.46756 * 321.86183 * 21 9 7 31 31 H 1.09002 * 113.47202 * 92.24195 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1133 5 1 3.0170 1.7466 1.2651 6 1 3.1868 1.6485 -1.1519 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4709 -1.3273 1.7645 13 6 6.5871 -0.9364 2.4109 14 8 7.5375 -0.5207 1.7826 15 6 6.6538 -1.0149 3.9144 16 7 7.9612 -0.5368 4.3708 17 7 8.2476 0.6833 4.6716 18 6 9.5057 0.7240 5.0359 19 7 9.9760 -0.5202 4.9449 20 7 9.0066 -1.2693 4.5410 21 6 4.4119 -2.2308 -0.3351 22 1 -0.4850 -0.8371 0.0715 23 1 4.6555 0.1232 -1.2580 24 1 4.2793 0.6479 0.4390 25 1 6.3869 -1.2364 -0.1717 26 1 4.7106 -1.6595 2.2671 27 1 5.8686 -0.3941 4.3458 28 1 6.5147 -2.0486 4.2308 29 1 10.0566 1.5985 5.3491 30 1 4.2436 -3.1278 0.2608 31 1 4.6305 -2.4537 -1.3795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030315611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:57 Heat of formation + Delta-G solvation = 170.731270 kcal Electronic energy + Delta-G solvation = -18143.716332 eV Core-core repulsion = 15080.591710 eV Total energy + Delta-G solvation = -3063.124622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.43765 -40.14533 -38.29732 -35.06593 -33.81447 -33.18153 -32.30686 -29.65264 -27.79610 -25.53077 -24.07768 -23.86189 -22.53232 -20.99507 -19.74565 -18.21190 -18.04716 -17.58195 -16.48650 -16.14796 -15.84801 -15.32747 -14.83092 -14.21458 -13.94998 -13.89537 -13.47754 -13.14322 -13.01357 -12.21743 -12.06080 -11.50631 -11.29585 -11.17072 -11.08782 -10.77908 -10.66245 -10.45260 -10.01731 -9.67771 -9.32560 -8.98760 -8.79114 -7.30252 -6.43952 -3.36632 1.05436 1.60957 2.14213 2.28579 2.99143 3.32993 3.36332 3.56829 3.91803 4.23968 4.34311 4.48554 4.52022 4.57384 4.74655 4.94816 5.29603 5.56585 5.61651 5.67114 5.75158 5.90747 5.99697 6.09365 6.16314 6.23467 6.71769 6.94244 7.39191 7.98635 8.11376 8.23599 8.84739 9.37202 10.21626 11.08456 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.005154 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.659130 B = 5431.428227 C = 5744.464699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.021 4.021 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.311 4.311 8 H 0.084 0.916 9 N -0.627 5.627 10 C 0.085 3.915 11 C 0.098 3.902 12 N -0.683 5.683 13 C 0.505 3.495 14 O -0.528 6.528 15 C 0.109 3.891 16 N -0.123 5.123 17 N -0.299 5.299 18 C 0.143 3.857 19 N -0.288 5.288 20 N -0.051 5.051 21 C 0.115 3.885 22 H 0.262 0.738 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.411 0.589 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.236 0.764 30 H 0.051 0.949 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.964 -1.904 8.993 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.220 4.220 3 Si 0.903 3.097 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.437 4.437 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.042 4.042 11 C -0.009 4.009 12 N -0.334 5.334 13 C 0.288 3.712 14 O -0.404 6.404 15 C -0.016 4.016 16 N -0.035 5.035 17 N -0.149 5.149 18 C -0.160 4.160 19 N -0.159 5.159 20 N -0.045 5.045 21 C -0.012 4.012 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.124 0.876 26 H 0.247 0.753 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.252 0.748 30 H 0.070 0.930 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.016 -0.602 8.353 16.327 hybrid contribution -0.249 -1.189 0.238 1.238 sum 13.767 -1.792 8.591 16.326 Atomic orbital electron populations 1.70927 1.05383 1.29562 1.51367 1.25713 0.96382 1.00965 0.98951 0.83680 0.73737 0.76048 0.76210 1.22174 1.22298 1.21409 1.20108 0.78726 0.95786 1.49109 0.89853 1.46155 1.02433 1.01534 1.85554 1.23273 0.87716 0.94278 0.98884 1.22568 0.99177 0.99891 0.79222 1.45314 1.15997 1.64320 1.07775 1.20129 0.83750 0.78784 0.88584 1.90794 1.36416 1.45427 1.67798 1.22044 0.79611 1.05128 0.94808 1.49486 1.11433 1.02712 1.39855 1.74742 1.18660 1.03393 1.18061 1.27340 0.88925 0.97917 1.01848 1.75864 1.20994 1.02120 1.16918 1.78977 0.90298 1.21672 1.13526 1.22700 0.86918 0.93528 0.98032 0.92799 0.92494 0.92694 0.87641 0.75285 0.83381 0.83366 0.74820 0.93032 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.70 55.49 0.76 -27.54 16 2 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 3 Si 1.07 26.00 25.13 -169.99 -4.27 21.73 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -6.75 6.65 56.52 0.38 -6.37 16 6 H -0.29 -6.59 6.13 56.52 0.35 -6.24 16 7 C -0.31 -8.35 11.08 -15.06 -0.17 -8.52 16 8 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 9 N -0.63 -14.02 3.70 -184.60 -0.68 -14.70 16 10 C 0.08 1.69 5.54 -8.36 -0.05 1.65 16 11 C 0.10 1.57 4.61 -67.67 -0.31 1.26 16 12 N -0.68 -9.35 5.40 -53.48 -0.29 -9.64 16 13 C 0.51 6.85 7.90 -10.98 -0.09 6.76 16 14 O -0.53 -9.43 16.02 5.56 0.09 -9.34 16 15 C 0.11 1.03 7.08 -5.19 -0.04 1.00 16 16 N -0.12 -1.58 3.49 -11.72 -0.04 -1.62 16 17 N -0.30 -3.91 12.13 29.34 0.36 -3.55 16 18 C 0.14 1.61 13.26 -91.58 -1.21 0.40 16 19 N -0.29 -3.92 12.50 29.33 0.37 -3.55 16 20 N -0.05 -0.71 13.25 60.35 0.80 0.09 16 21 C 0.12 1.99 8.44 -8.51 -0.07 1.92 16 22 H 0.26 7.84 8.73 -40.82 -0.36 7.48 16 23 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 24 H 0.06 1.16 4.65 -51.93 -0.24 0.92 16 25 H 0.11 1.64 7.45 -51.93 -0.39 1.25 16 26 H 0.41 4.96 8.76 -40.82 -0.36 4.60 16 27 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.15 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.24 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 274.62 15.07 4.14 4.14 Total: -1.00 -35.97 274.62 -3.96 -39.93 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.16 Total: 0.27 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.03 Total: 3.77 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 1.27 Total: -60.51 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.27 Total: 21.73 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.97 -3.96 -39.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030315611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.665 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds